RNA id: TU333823


Basic Information

Item Value
RNA id TU333823
length 281
lncRNA type intronic
GC content 0.41
exon number 1
gene id G294085
representative True

Chromosome Information

Item Value
chromosome id CI01000081
NCBI id null
chromosome length 1644768
location 1494822 ~ 1495102 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCATTATCCCATTTACAAGGAGCAGATAAAAGGTTCAGAATTCATTTCAAGTGTGCTATTTGCATTTGGAAACTGTTGCTGTCAACTCTCAATATGAGATCCAAAGAGCTGTCACTATCAGTGAAGCAAGCCATCATTAGGCTGAAAAAACAAAACAAACCCATCAGAGAGATAGCAAAAACTTTAGGTGTGGCCAAATCAACTGTTTGGAACATCCTTAAAAAGAAAGAACGCACCGGTGAGCTCAGCAACACCAAAAGACCCGGAAGACCACGGAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333806 lncRNA upstream 38572 1455988 ~ 1456250 (+) True G294069
TU333791 lncRNA upstream 59352 1435214 ~ 1435470 (+) True G294054
TU333734 lncRNA upstream 117607 1376764 ~ 1377215 (+) True G294010
TU333594 lncRNA upstream 201253 1292985 ~ 1293569 (+) True G293893
TU333638 lncRNA upstream 322292 1159877 ~ 1172530 (+) True G293933
TU333828 lncRNA downstream 11307 1506409 ~ 1506897 (+) True G294090
TU333829 lncRNA downstream 11890 1506992 ~ 1507204 (+) True G294091
TU333834 lncRNA downstream 14436 1509538 ~ 1510109 (+) False G294094
TU333833 lncRNA downstream 14764 1509866 ~ 1511379 (+) True G294094
TU333836 lncRNA downstream 18466 1513568 ~ 1513957 (+) True G294095
CI01000081_01401235_01401648.mRNA mRNA upstream 93168 1401073 ~ 1401654 (+) True CI01000081_01401235_01401648
CI01000081_01241322_01259737.mRNA mRNA upstream 233552 1241322 ~ 1261270 (+) True CI01000081_01241322_01259737
CI01000081_01137104_01147739.mRNA mRNA upstream 347056 1137104 ~ 1147766 (+) True CI01000081_01137104_01147739
CI01000081_01120653_01123960.mRNA mRNA upstream 370173 1120603 ~ 1124649 (+) True CI01000081_01120653_01123960
CI01000081_01057614_01058675.mRNA mRNA upstream 435954 1056300 ~ 1058868 (+) True CI01000081_01057614_01058675
CI01000081_01536670_01610329.mRNA mRNA downstream 41568 1536670 ~ 1610329 (+) True CI01000081_01536670_01610329
CI01000081_01612060_01612809.mRNA mRNA downstream 116958 1612060 ~ 1613912 (+) True CI01000081_01612060_01612809
TU333439 other upstream 749307 737051 ~ 745515 (+) True G293747

Expression Profile