RNA id: TU339561


Basic Information

Item Value
RNA id TU339561
length 61
RNA type TUCP
GC content 0.54
exon number 1
gene id G299107
representative True

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1126738 ~ 1126798 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCCCACCTGCCCTGTCTACAGGTGGGCCAGGAGCAGAAACACACCTACCTGCCCCTGGAGGTGTGTAACATTGTAGCAGGGCAGCGGTGCATCAAGAAACTGACAGATAATCAAACATCCACCATGATCAAAGCCACGGCACGATCAGCACCAGACAGACAGGAGGAGATCAGCAGACTGATGAAGAACGCTAACTTTAATCTGGATCCCTACATTCAAGAGTTTGGAATCAAAGTGAAGGACGACATGGCCGAGGTGACCGGGAGAGTCCTTCCAGCTCCTATCCTGCAGTACGGTGGTCGGAATCGTGCCATCGCGACTCCCAACCAGGGTGTGTGGGATATGAGGGGAAAGCAGTTCTACAACGGCATTGAGATCAAAGTTTGGGCCATCGCTTGCTTTGCTCCGCAGAAACAGTGTCGGGAAGAGGTTCTCAAGAACTTCACCGACCAGCTGCGTAAGATCTCAAAGGACGCTGGGATGCCCATCCAGGGTCAGCCGTGTTTCTGTAAGTACGCACAGGGAGCCGACAGCGTGGNGCCCATCCAGGGTCAGCCGTGTTTCTGTAAGTACGCACAGGGAGCCGACA

Function

GO:      GO:0035068, GO:1901224, GO:0003674, GO:0031054, GO:0035280, GO:0005737, GO:0090625, GO:0016020, GO:0003725, GO:0006402, GO:0010501, GO:0070578, GO:0044822, GO:0008150, GO:0000794, GO:0035279, GO:0035278, GO:0048015, GO:0007223, GO:0035198, GO:0035194, GO:0035196, GO:0000932, GO:0072091, GO:0005575, GO:0003727, GO:0010628, GO:0003723, GO:0005515, GO:0016442, GO:0005829

KEGG:

id description
K11593 ELF2C, AGO; eukaryotic translation initiation factor 2C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339557 lncRNA downstream 3482 1061523 ~ 1072664 (-) False CI01000086_01069219_01094068
TU339583 lncRNA downstream 16053 1059004 ~ 1060093 (-) True G299128
TU339574 lncRNA downstream 31526 1036036 ~ 1044620 (-) True G299119
TU339724 lncRNA downstream 73527 1002265 ~ 1002619 (-) True G299266
TU339677 lncRNA downstream 199978 853604 ~ 876168 (-) True G299221
TU339748 lncRNA upstream 51019 1177817 ~ 1211607 (-) False G299283
TU339750 lncRNA upstream 51019 1177817 ~ 1237208 (-) False G299283
TU339747 lncRNA upstream 82139 1208937 ~ 1237208 (-) True G299283
TU339768 lncRNA upstream 102123 1228921 ~ 1231136 (-) False G299299
TU339769 lncRNA upstream 103733 1230531 ~ 1231136 (-) False G299299
CI01000086_01005334_01006342.mRNA mRNA downstream 69804 1004584 ~ 1006342 (-) True CI01000086_01005334_01006342
CI01000086_00978789_00999074.mRNA mRNA downstream 76406 978540 ~ 999740 (-) True CI01000086_00978789_00999074
CI01000086_00949574_00963179.mRNA mRNA downstream 112886 948026 ~ 963260 (-) True CI01000086_00949574_00963179
CI01000086_00935341_00936321.mRNA mRNA downstream 136958 935052 ~ 939188 (-) True CI01000086_00935341_00936321
CI01000086_00587995_00596565.mRNA mRNA downstream 479407 587765 ~ 596739 (-) False CI01000086_00587995_00596565
CI01000086_01193934_01219331.mRNA mRNA upstream 66917 1193715 ~ 1219440 (-) True CI01000086_01193934_01219331
CI01000086_01237966_01253245.mRNA mRNA upstream 111113 1237911 ~ 1253288 (-) True CI01000086_01237966_01253245
CI01000086_01257926_01260025.mRNA mRNA upstream 131128 1257926 ~ 1260025 (-) False CI01000086_01257926_01260025
CI01000086_01296658_01297947.mRNA mRNA upstream 169032 1295830 ~ 1298059 (-) True CI01000086_01296658_01297947
CI01000086_01313364_01320865.mRNA mRNA upstream 186224 1313022 ~ 1322014 (-) True CI01000086_01313364_01320865
TU339629 other downstream 308267 765617 ~ 767879 (-) True G299173
TU339493 other downstream 479517 588004 ~ 596629 (-) True CI01000086_00587995_00596565
TU339299 other downstream 539836 535023 ~ 536310 (-) True G298872
TU339566 other upstream 132216 1260539 ~ 1261237 (-) True G299111
TU340045 other upstream 541408 1668206 ~ 1695177 (-) False G299528
TU340046 other upstream 541408 1668206 ~ 1695177 (-) True G299528
TU340104 other upstream 767116 1903205 ~ 1903419 (-) True G299570
TU340155 other upstream 1237533 2454446 ~ 2454565 (-) True G299608

Expression Profile