RNA id: CI01000086_01313364_01320865.mRNA



Basic Information


Item Value
RNA id CI01000086_01313364_01320865.mRNA
length 1977
RNA type mRNA
GC content 0.37
exon number 4
gene id CI01000086_01313364_01320865
representative True

Chromosome Information


Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1313022 ~ 1322014 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATACTGAAAAAGAAAAAGAAAAAATGTGGTTATAATAAAACCTATATACTGTATATAATATATATTTGTAGTCAATACTAAAAGAGGTGTGTGACTACACAGAAATTGAGTAAAAGTGTGACAAATAGGCATGTTCTACAATACACTGTTTTTTGTTTTTTAAAAGAAATTGATACTTTTATTCAGCAAGGACACATTAAATTGATTAAAAGTGCCAGTAAAGCCATTTATAATGTTACAAAAGACTTCTATTTGAAATAAATGCTGTTCTAAACTTTCTATTCATCAAAGAATCCTGGAAGAAAAATGTATCATGGTTTCCACAAAAATATGAAGCAGTTTTTAACATTAATAATAATCAGAAATGTTTCTTGCACAGCAAATCAGCATATTAGAAAGATTTCTGAAGGATCATGTGACAGAATGGCTTAAAACCCTCTTAACTGTGAAAAAATACCTGCTTTCATAAATTGGCAGAAAAAACAATATGATACATAAGACTCCATTGTCCAATTTAGATGATTGATAGAATGACAGAAGGACAAACAGATAGACAGAAGAAGTTAACAATCCAAGACAGACATGAAAGAAGGATTTTCTTCTGATTGTTTGTCTCATCTGAGAGATTACGAACGCTAAACAAAACAACGTGAGGGCACAGAGCTCCAGACCAGATGTAGACTCTAAACAAAAGAGTCATGATGGGGTCGGTAGGGAGTGTGGAGGGTCAAAGGTCAGGGCAAAGGGAAAGGTAAAAGAGACCAGAGTCCAAGATCTACAGAAAAACACATTTTAAACTATGTATGCACATACAGAGAGACCCAAAATTGAAACCAACCAGTAAAAAGATTACAAATGTTATAGTACTGACTGTACAACCTCTACAAAATCAAAAGAACAAAATGAGAATAAGTGGAGAAAATATGTTGAATGGACATGAAAATGTCAATGCAAAAAATGCACAATGTTTAATTTTCTTTATGCAACATAATTTGTGAAATGTGACCTGATTTTCACAAAACATGCTGAATCTGACAGAATGCATGTTTTCCCCCTTTCTGTCAGGCAACTTTGCTGTTAGAAAGAAAAAAAGTCATTAATTATTCAGGTTAACTGGCACATTTCCAAACCAAATCTATAAAGTCACAGATGGTGTATGCACAGATCCGGAGCAACGGGCACATGCTCAGCCAGCGTATGCTTCAAACGTATGGGGCCTCAAATGCAAAGACGCAAATGGTCCCAGCATTCAGACAGGAAGCTGGGTTTACACTGACTTCCTACCCTGAAGATGTACTGAGATGCTGCAGAGAAACTGGACCTCTGAACAACGAGAGGTGTTGTAAAAATGGCATATGTGCTTTGACCATCGCTACAGCCTACTGTACTGTAATGAGTGCAGGTCAGTTCCCCCAAACAATCTCCCTCTGCTGTCGTGTTTGTGGTGGGGTCAGTTTACACTCATACCTGCCCGCCCACCGTAGTGGGATGATCCCGGTACATCCACGAGACACAGACGCTCCTCCGGCATTCAGTTCAGAAACCAATGAGCCGCAATCGACACAGCTCGTGTTGGACAGTAAACGGAGATTACCAGAGCTTTCACATGTGGATACGGATCACGACACACGGTAAGAGCAAATATAGCACTTAAGTATACGACTAGTGATTAATATCCCACCAGATAATGTTCATTCAGCATTTATAGCGAATTTACAGTCTTGTCGAATCTGAAGTCGCGTCGTTTTCATGTTCGTGTGTCTGTAAACAAACACCTGAATATAAACGGTCATTGATCTTAAAATTATTATAAGTTCAGTTTGAGGACTCCAGTATGTAGGCTATGTATGAATCGAATAATTATTATTTTTTCCTGTAAATAATTGATGTCACTGCAGCTTTCTTTGAGGTTTATGTGGATACTTTGGAGATAAAAGTACAAATTGTGTATGTGTTTAAATATGAAAGATAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU339750 lncRNA downstream 75814 1177817 ~ 1237208 (-) False G299283
TU339747 lncRNA downstream 75814 1208937 ~ 1237208 (-) True G299283
TU339768 lncRNA downstream 81886 1228921 ~ 1231136 (-) False G299299
TU339769 lncRNA downstream 81886 1230531 ~ 1231136 (-) False G299299
TU339766 lncRNA downstream 81886 1230594 ~ 1231136 (-) True G299299
TU339813 lncRNA upstream 19429 1341443 ~ 1346783 (-) False G299331
TU339815 lncRNA upstream 19429 1341443 ~ 1346880 (-) False G299331
TU339811 lncRNA upstream 19497 1341511 ~ 1346783 (-) True G299331
TU339797 lncRNA upstream 31392 1353406 ~ 1354349 (-) True G299321
TU339800 lncRNA upstream 48997 1371011 ~ 1373189 (-) True G299322
CI01000086_01296658_01297947.mRNA mRNA downstream 14963 1295830 ~ 1298059 (-) True CI01000086_01296658_01297947
CI01000086_01257926_01260025.mRNA mRNA downstream 52997 1257926 ~ 1260025 (-) False CI01000086_01257926_01260025
CI01000086_01237966_01253245.mRNA mRNA downstream 59734 1237911 ~ 1253288 (-) True CI01000086_01237966_01253245
CI01000086_01193934_01219331.mRNA mRNA downstream 93582 1193715 ~ 1219440 (-) True CI01000086_01193934_01219331
CI01000086_01101333_01138683.mRNA mRNA downstream 174339 1100760 ~ 1138683 (-) False CI01000086_01101333_01138683
CI01000086_01670242_01672517.mRNA mRNA upstream 347774 1669788 ~ 1674496 (-) True CI01000086_01670242_01672517
CI01000086_01852638_01897719.mRNA mRNA upstream 530132 1852146 ~ 1897719 (-) False CI01000086_01852638_01897719
CI01000086_01915013_01921794.mRNA mRNA upstream 592999 1915013 ~ 1921794 (-) True CI01000086_01915013_01921794
CI01000086_01948087_01983560.mRNA mRNA upstream 625993 1948007 ~ 1983560 (-) True CI01000086_01948087_01983560
CI01000086_01994840_02008387.mRNA mRNA upstream 672581 1994595 ~ 2008387 (-) True CI01000086_01994840_02008387
TU339566 other downstream 51785 1260539 ~ 1261237 (-) True G299111
TU339561 other downstream 186224 1126738 ~ 1126798 (-) True G299107
TU339629 other downstream 545143 765617 ~ 767879 (-) True G299173
TU339493 other downstream 716393 588004 ~ 596629 (-) True CI01000086_00587995_00596565
TU339299 other downstream 776712 535023 ~ 536310 (-) True G298872
TU340045 other upstream 346192 1668206 ~ 1695177 (-) False G299528
TU340046 other upstream 346192 1668206 ~ 1695177 (-) True G299528
TU340104 other upstream 571900 1903205 ~ 1903419 (-) True G299570
TU340155 other upstream 1042317 2454446 ~ 2454565 (-) True G299608
TU340140 other upstream 1543668 2865682 ~ 2868103 (-) False G299598

Expression Profile