RNA id: CI01000086_01670242_01672517.mRNA


Basic Information

Item Value
RNA id CI01000086_01670242_01672517.mRNA
length 2877
RNA type mRNA
GC content 0.38
exon number 2
gene id CI01000086_01670242_01672517
representative True

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1669788 ~ 1674496 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAGAACTACGTGACGAAATTCTCAAGTTAACAACATGTTATGAGGAGTTTGGGCTCTAAACACAAACATCAACATGCTAAAATGAAAGCGGTGACATCCAGGAAAACACATTTGAACTGCATTTTAAATGCATTTGCATTCTGCAAATCCACTGCAGAATGGATTTTAACATGGTAAAATGTGTTAAACGGCTGAAAGCAGCATGCATGCACATAACCCAATAAGAAACACCCACTTAAATCTGTAAAGTGATCAACAACTGCTTTTATGTAGGGGTGTAACGATACGCAAAACTGATGATTCAGTTTCGTACCTCAGTTTTGAAGACACTTTTCGGTTCGGTACAAACAACCCAAGTTGGGTTGAAAATGGACAAATCCAGCAAATGGGTTGTTTTAACCCAGCGGTTGGGTTAAATGTTTGCCCAACCTACTGGGTAGTTTATTTAACTCAACTATTGTTTAAAAATTACTGTATTGCTTGCTTAAAATGAACCCAAATATGTTGGGAATTAACATTTATTAATATGTTTAATAAATGAACATTTATTTATAAGTTTAATAAATAATAATTAAACAATAATCATTTATTAAATTGCTTATTAATAAATGTTCACCTTTTGATTATTATTGTTGCCTCTAACAGATTTTTTTCCAACCTATTTTGGGTTAATTTTAAGCCAGCCTTACAGTAATTTTTAAACAATAGTTGAGTTCAATAAAACTTCACAGCACGTTGGGCAAACATTTAACCCAACCGCTGGGTTAAAACAACCCAATCGCTGAGTGTGTCCATTTTCAACCCAGCTTGGGTTGTTTTAACCCAGCATTTTTTAGTGTACGGTTTGGTACAGCAGGTGGAGAAAACAAGTTGTGTCTCTGTCTTTAAATAAATTCAATTATAATTAAAAGTTTCTTAAGAATAATAATAATAAAAAAAATATCTCTGCTAATGCTGTAAACTATTTAAGGGAGCCTTTACTTGCACATTGCTATAATAATAAAGTTTCAGAGCCCAAATTATTAACCTAAATTCAGTTGCTATTTGTTTTTTCATATAATAATGAACACTCAAATAACAAATTGTATGCACACTTGTAAACTGCACATTAGGCAGTTTTTGCATTCACTTCTAAATGTTTTTACTCCAATTCGTTGTTGAAATATAATCATTTACACAGTGGCTGTCATTTTCATGACATATTTTTTTAAACATACATTAAATAATCAAGACATCACTAACTAGTTAAGTAAAATATAATAAATATAGGCTAATATAGTGCATATATTTAGTGAGAGTTTATTTCTGGCGAACTAACAAGCTAGCTTGAGGTAAATGCAGTGTTTTTCATTTTACAATCTGTTTTACTGACATCTTTCCGCTATTGAAACACAGATTGGGTGATTACACGAGATATTATACTTTCAGTGAGTTGTACTGTATCTTTCAACATACCTTCAGATGTTCATTCATGTTTATTCGTTAAAGAGGAAGAGATGATCGTGTTAACTCGCGCTCCGCGCTGCCGCTTGAAATGAGGCGCCTGTACAGCGATCTGTCACTCACACCACATTAAAGAGCGTCAAAACTGCAATTTTTGTTTGAATTTCGTGATAAAATGGACAGAACACTTTGTTTCTTATCGAAAGTAACAAAATGCGGAGCTTATTGCAATTATTGGTGGGTAATGGTAGTTAAGCTACAACGCTGTAGATCTAATGGGCAGGGCCGGGCGGGGTGTGTTCGGTACACCAAGAGTGTATCGGTTTTCAGTTCGGTTTGAATATCGCTACACCCCTAGTTTTATGCGATCAGATGTGAACAGTGTAAAAGTTTCATTCAAGTCCCTTTTACCAGATAAACACACTCACATCAATAATAGTATGTCAGAAATAATCTGTTCAAAACTGCATCCTTTTAATGTAACTCTCACATCTGAGCATGTGTGCGGCAGACTGTCTCATCTGAACTCACCGCATGAGCTCAATCATGTCTCATGAGGAGGGCTGCCGAGTCATCATGGGCGTCCGGAGAGTGATGGGGGCCCGGGGTGGGCAGGCTGGCACTGACAGGCCTCTTCCAGCCTCATTAAATCCCCAGATGGACAAAGGACTGGTGCATGACATCAGACCAGATCTCACAATCTCTTCATGTGGAGGTTCAGACAACAATATGAACTTAGTCAGGGCGAGGAGGACAGGACAAAGCAGACAAACAGTGAATCTGGCAGAACTCTCCTGTAATAAAGATAAAAACCGCCTTCAGGCTGAATCGTCTCTTTACATTCTATCTCTGGGCGACAGACACAGAAAATGCATCAGCTCCACAGAACCTGAAGGCAGGACGTGTTCAGAAAGCCTGATCTCTGAACTTTCTTCGTCCTTGAGAGCAGATCTCTTCATATCTTCACACATCCGCTGATGATAATCAAAAGATCGGCATGCTTGTGTCAACTAGAAGCGCAGAGCTCGAAAAGCTCATAAACCTCTAGAAATTATATTTGGCCCTTTCTTTATCCATAGGATCGCAGATGGCAGTGGCAGAATGTGGGGTTTATGTGAATGAGAAAACGACATGAAACCAGATTAGAGCGCATTCGTCAAGCTTAGAGGGAATGAAGGTGTGCTGTCGCTCATTTTGATTTATTAGCCGCCCTTGATGGAGATCTCGTCTCTGCTTTCTGCCCTTCAGATAGTTCATACATGCCTGGCCGACTATAATGGAGTTAAATATAGTTTGGCAGAGGAAGGGTTTATGGTCTGTCGATATGCTGAAATGAGTTTTTGAGCACATAAATTTACAAAAATACATTTCAGCTCAGTGCAAGTTGATCATGTTTGAAAGTGACCCGTGTCACAAGAACTTAGAAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340044 lncRNA downstream 2192 1667350 ~ 1667596 (-) True G299527
TU340039 lncRNA downstream 16188 1653336 ~ 1653600 (-) True G299522
TU340036 lncRNA downstream 19460 1650101 ~ 1650328 (-) True G299519
TU340035 lncRNA downstream 19729 1649751 ~ 1650059 (-) True G299518
TU339838 lncRNA downstream 23276 1644013 ~ 1646512 (-) True G299354
TU340093 lncRNA upstream 128365 1802861 ~ 1803892 (-) False G299560
TU340094 lncRNA upstream 128365 1802861 ~ 1803892 (-) True G299560
TU339976 lncRNA upstream 131590 1806086 ~ 1841270 (-) False G299478
TU339978 lncRNA upstream 131590 1806086 ~ 1840808 (-) False G299478
TU339971 lncRNA upstream 163789 1838285 ~ 1839221 (-) False G299478
CI01000086_01313364_01320865.mRNA mRNA downstream 347774 1313022 ~ 1322014 (-) True CI01000086_01313364_01320865
CI01000086_01296658_01297947.mRNA mRNA downstream 371729 1295830 ~ 1298059 (-) True CI01000086_01296658_01297947
CI01000086_01257926_01260025.mRNA mRNA downstream 409763 1257926 ~ 1260025 (-) False CI01000086_01257926_01260025
CI01000086_01237966_01253245.mRNA mRNA downstream 416500 1237911 ~ 1253288 (-) True CI01000086_01237966_01253245
CI01000086_01193934_01219331.mRNA mRNA downstream 450348 1193715 ~ 1219440 (-) True CI01000086_01193934_01219331
CI01000086_01852638_01897719.mRNA mRNA upstream 177650 1852146 ~ 1897719 (-) False CI01000086_01852638_01897719
CI01000086_01915013_01921794.mRNA mRNA upstream 240517 1915013 ~ 1921794 (-) True CI01000086_01915013_01921794
CI01000086_01948087_01983560.mRNA mRNA upstream 273511 1948007 ~ 1983560 (-) True CI01000086_01948087_01983560
CI01000086_01994840_02008387.mRNA mRNA upstream 320099 1994595 ~ 2008387 (-) True CI01000086_01994840_02008387
CI01000086_02018950_02030464.mRNA mRNA upstream 344324 2018820 ~ 2030525 (-) True CI01000086_02018950_02030464
TU339566 other downstream 408551 1260539 ~ 1261237 (-) True G299111
TU339561 other downstream 542990 1126738 ~ 1126798 (-) True G299107
TU339629 other downstream 901909 765617 ~ 767879 (-) True G299173
TU339493 other downstream 1073159 588004 ~ 596629 (-) True CI01000086_00587995_00596565
TU339299 other downstream 1133478 535023 ~ 536310 (-) True G298872
TU340104 other upstream 219418 1903205 ~ 1903419 (-) True G299570
TU340155 other upstream 689835 2454446 ~ 2454565 (-) True G299608
TU340140 other upstream 1191186 2865682 ~ 2868103 (-) False G299598
TU340143 other upstream 1191186 2865682 ~ 2868103 (-) True G299598

Expression Profile