RNA id: TU339748


Basic Information

Item Value
RNA id TU339748
length 430
lncRNA type sense_over
GC content 0.33
exon number 3
gene id G299283
representative False

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1177817 ~ 1237208 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTGACGAACTAACAAGCTATGGACTAGCCTGAGATAAAACATCTGTCCTGTCAGCACATTTCCACTCCTCCCCTTGACTACAGCCACTTACATTCCCGTCGACAGTCAAAACAACAAGTTTTTAAACAAGCTTTTAGTTGTACAGAAGGGCACGCTTCTGCTCTCCATGAGCGAGTCCTGCTGCATGAGACTCTTCCTGCTAGTTTAGGTGGAGATCTGGTGCGAATGAGGAGGAGAGACTCTGGAAAAAAAAACTAAAAAAAACTAAAAATTAAAAATTTATAGACATAAAATGACAATGTAAACAACAAAATTACAAACACTTTAAAATTAAAATGAAAAACAATATGATAAAAAGGAAATCAATGATAATAAAGTGTTTTTGATTGAAGAAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339557 lncRNA downstream 105153 1061523 ~ 1072664 (-) False CI01000086_01069219_01094068
TU339583 lncRNA downstream 117724 1059004 ~ 1060093 (-) True G299128
TU339574 lncRNA downstream 133197 1036036 ~ 1044620 (-) True G299119
TU339724 lncRNA downstream 175198 1002265 ~ 1002619 (-) True G299266
TU339677 lncRNA downstream 301649 853604 ~ 876168 (-) True G299221
TU339768 lncRNA upstream 17314 1228921 ~ 1231136 (-) False G299299
TU339769 lncRNA upstream 18924 1230531 ~ 1231136 (-) False G299299
TU339766 lncRNA upstream 18987 1230594 ~ 1231136 (-) True G299299
TU339813 lncRNA upstream 129836 1341443 ~ 1346783 (-) False G299331
TU339815 lncRNA upstream 129836 1341443 ~ 1346880 (-) False G299331
CI01000086_01101333_01138683.mRNA mRNA downstream 39134 1100760 ~ 1138683 (-) False CI01000086_01101333_01138683
CI01000086_01069219_01094068.mRNA mRNA downstream 83566 1069007 ~ 1094251 (-) False CI01000086_01069219_01094068
CI01000086_01005334_01006342.mRNA mRNA downstream 171475 1004584 ~ 1006342 (-) True CI01000086_01005334_01006342
CI01000086_00978789_00999074.mRNA mRNA downstream 178077 978540 ~ 999740 (-) True CI01000086_00978789_00999074
CI01000086_00949574_00963179.mRNA mRNA downstream 214557 948026 ~ 963260 (-) True CI01000086_00949574_00963179
CI01000086_01237966_01253245.mRNA mRNA upstream 26304 1237911 ~ 1253288 (-) True CI01000086_01237966_01253245
CI01000086_01257926_01260025.mRNA mRNA upstream 46319 1257926 ~ 1260025 (-) False CI01000086_01257926_01260025
CI01000086_01296658_01297947.mRNA mRNA upstream 84223 1295830 ~ 1298059 (-) True CI01000086_01296658_01297947
CI01000086_01313364_01320865.mRNA mRNA upstream 101415 1313022 ~ 1322014 (-) True CI01000086_01313364_01320865
CI01000086_01670242_01672517.mRNA mRNA upstream 458181 1669788 ~ 1674496 (-) True CI01000086_01670242_01672517
TU339561 other downstream 51019 1126738 ~ 1126798 (-) True G299107
TU339629 other downstream 409938 765617 ~ 767879 (-) True G299173
TU339493 other downstream 581188 588004 ~ 596629 (-) True CI01000086_00587995_00596565
TU339299 other downstream 641507 535023 ~ 536310 (-) True G298872
TU339566 other upstream 47407 1260539 ~ 1261237 (-) True G299111
TU340045 other upstream 456599 1668206 ~ 1695177 (-) False G299528
TU340046 other upstream 456599 1668206 ~ 1695177 (-) True G299528
TU340104 other upstream 682307 1903205 ~ 1903419 (-) True G299570
TU340155 other upstream 1152724 2454446 ~ 2454565 (-) True G299608

Expression Profile