RNA id: TCONS_00017556


Basic Information

Item Value
RNA id TCONS_00017556
length 1891
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_008886
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 647854 ~ 660394 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttttttttttttacattagaaatGTCAGTCTTGCAACTTAAATTGTGAATTACATGATCAAATTATTTCTGAATATATGCAACTTTTTtctttcctgttttgtgtaggaCTGAAAATCTACTGGTCTCATATTCACTGCATACACAAACTCTGGTCGAACCAGCTCAGTTGTTAGATCCTGTAATCTGACTAATCCAACAGAGTTTGTTTGGAATTGACTTACTGAAATCAACTAATACATCATGGCTCATGAACAGGACTACCACACTCTAATGTCTGGACTGCAAGAGCTTAATTTTGAAGGGAATCCAGTCCCCTGTAATCTAATACTAATAGGTGAACATTCCTTTCCCCTTTTCATTAATCCATGTGGTCAGGTACTGATGGCTGCATCTCATTATGGTCAGGGACGTGTGGTGGTGTTGGGACATGAAAATTACTTAAGACGCTTTCCTGGCCTGATAATGAATGCCTTGACATGGCTCAGGCCAGATACCCGAGATGCCGGGGTTGTAGGGATTCAGAGTCGTTTACATGCAGTAGCTGAAAACTTGAACCACTGCAATATCAAGACAGAGCTAGGAGACTTTCGGAATGACTTATCTGTATATATCACAGATTCTTACAGTGTTGAGACATGTGCAAAGGATCTGATAGCTTTTCTCAAAGCTGGGGGTGGTTTAATCATTGCTGGACAAGCCTGGCACTGGTCTTATGGACACCCACAAGAAAACATTTTGAGGAACTTTCCAGGTAACAAGGTCTGCAGTGTTGCAGGGATTTACTTTACAGAGCAGACCGGAGAAGTCGGCACCTTTCCTGTTCCTGGAAATATCCCTTCTAGTTGGCGAGCTTGGTCAAAACCCAATAACTTTAAAAAGGATCTAGAGTTCTTGCTGGAAGATGTGTCCGAGTTTGACACTCGGGGTAATGCTGTAGCATCTGAGGTGTTGGTGCACGGACCATTGGCATTTCCCATCGCTCTCACTCCAGATGGAAAACCATTTGTTGCTGGTGCCTATTATGGGCTAGGTCGAGTAATTCTGGTATCCCATGAATGCTACCTGAGCAAGAAAACTATGTCCACTTTCATGATCAATGCCATCAAGTGGCTTGATGAGGGTCGCCAGGGTGTTGTTGGGATCTTACCAAGGCTTAAAGCAGCCCATGAGGTACTGGCCAAATCTGGCTTAGATTGTAAGCTGACTGATTTCAGAGATGACCTTAGCGTCTACGTCTGCACTTCCTACAGTGATGCCCACTGTGCAGAGATCCAAGAATTTGTTGCAGAAGGAGGAGGACTTCTGATTGGGGGTCATGCTTGGAATTGGGCCCAGACCCACCGAGGCTCCAATGTGATGACTGATAACCCAGGAAACCGCATTCTTAACAAGATGGGATTGAGTCTATTGGAAAATACCTTGAGTGGAGGGTTATATAAAGCTCCAGAAGTAGAGCATAGTAGTGAAGAGGGGTACCACTTTTTGAGAATGCTGCAGCGATTTGCTGAACATGTCAAATTAGGGCAAAAACTGACTGATCAAGAACAGGACTACCTGAAGCAGCTGGGCAAAGATTGTGCCAGTTACCTTCGCATGCGCTGTTATGATAGTGCCGCTTACACTTCAGTGTTAGCTCTTCTTACTGATGTAGTGAAGATGCCAAGTTTTCCACAAGTGAGTAGTACCTGTGCTGTGGAAAGTCCCAAAGACCGCATGATGCTCCACATTGGTAAGGAGGTCTACAAAGTGACACCTGATCCTGATGACCTTCTTCCATACATCATCAAGGACAGACCCAATTTGCCCACTGTGTCTAATGCAAGAGTTCGGATCACTGCCAACACTGCAGGTACTAAAATTGCTCCGGTACTGAGGTGGTTATGGTGA

Function

GO:

id name namespace
GO:0010359 regulation of anion channel activity biological_process
GO:0090314 positive regulation of protein targeting to membrane biological_process
GO:0005886 plasma membrane cellular_component
GO:0044325 ion channel binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131122-12 Predicted to enable transmembrane transporter binding activity. Predicted to be involved in positive regulation of protein targeting to membrane and regulation of anion channel activity. Predicted to be active in plasma membrane. Orthologous to human TCAF1 (TRPM8 channel associated factor 1) and TCAF2 (TRPM8 channel associated factor 2).

Ensembl:

ensembl_id ENSDART00000162335

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019098 lncRNA downstream 16329 622709 ~ 633408 (-) True XLOC_008885
TCONS_00017553 lncRNA downstream 48378 600847 ~ 601359 (-) True XLOC_008883
TCONS_00017552 lncRNA downstream 54474 592594 ~ 595263 (-) False XLOC_008883
TCONS_00019096 lncRNA downstream 213207 434443 ~ 436530 (-) False XLOC_008875
TCONS_00019099 lncRNA upstream 65022 725416 ~ 727742 (-) False XLOC_008890
TCONS_00019100 lncRNA upstream 152702 813096 ~ 815019 (-) True XLOC_008893
TCONS_00019101 lncRNA upstream 157797 818191 ~ 848462 (-) True XLOC_008894
TCONS_00019102 lncRNA upstream 176621 837015 ~ 848792 (-) True XLOC_008895
TCONS_00019103 lncRNA upstream 209567 869961 ~ 909037 (-) True XLOC_008896
TCONS_00017554 mRNA downstream 31940 611229 ~ 617797 (-) True XLOC_008884
TCONS_00017551 mRNA downstream 45384 592253 ~ 604353 (-) False XLOC_008883
TCONS_00017550 mRNA downstream 47766 590670 ~ 601971 (-) False XLOC_008883
TCONS_00017548 mRNA downstream 58429 586605 ~ 591308 (-) False XLOC_008883
TCONS_00017558 mRNA upstream 4762 665156 ~ 669476 (-) False XLOC_008887
TCONS_00017559 mRNA upstream 5806 666200 ~ 669476 (-) True XLOC_008887
TCONS_00017560 mRNA upstream 12590 672984 ~ 679478 (-) False XLOC_008888
TCONS_00017561 mRNA upstream 13343 673737 ~ 684911 (-) False XLOC_008888
TCONS_00017562 mRNA upstream 13982 674376 ~ 679478 (-) True XLOC_008888
TCONS_00017537 other downstream 223981 425695 ~ 425756 (-) True XLOC_008873
TCONS_00017535 other downstream 300170 349451 ~ 349567 (-) True XLOC_008870
TCONS_00017597 other upstream 661396 1321790 ~ 1321906 (-) True XLOC_008910
TCONS_00017627 other upstream 1174577 1834971 ~ 1837883 (-) True XLOC_008922
TCONS_00017639 other upstream 1605575 2265969 ~ 2266083 (-) True XLOC_008927
TCONS_00017647 other upstream 1964634 2625028 ~ 2625663 (-) True XLOC_008933
TCONS_00017655 other upstream 2075989 2736383 ~ 2736498 (-) True XLOC_008940

Expression Profile

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