Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU374031 |
| length | 1247 |
| lncRNA type | antisense_over |
| GC content | 0.34 |
| exon number | 2 |
| gene id | G329067 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000112 |
| NCBI id | null |
| chromosome length | 5247617 |
| location | 2423842 ~ 2425198 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU374044 | lncRNA | upstream | 11129 | 2412411 ~ 2412713 (+) | True | G329080 |
| TU374043 | lncRNA | upstream | 13122 | 2410495 ~ 2410720 (+) | True | G329079 |
| TU373989 | lncRNA | upstream | 140932 | 2282689 ~ 2282910 (+) | True | G329025 |
| TU373973 | lncRNA | upstream | 141217 | 2250076 ~ 2282625 (+) | True | G329015 |
| TU373870 | lncRNA | upstream | 175434 | 2245982 ~ 2248408 (+) | True | G328925 |
| TU374065 | lncRNA | downstream | 116469 | 2541667 ~ 2542297 (+) | True | G329098 |
| TU374064 | lncRNA | downstream | 225176 | 2650374 ~ 2653361 (+) | True | G329097 |
| TU374125 | lncRNA | downstream | 347303 | 2772501 ~ 2772741 (+) | True | G329145 |
| TU374131 | lncRNA | downstream | 359842 | 2785040 ~ 2785269 (+) | True | G329151 |
| TU374133 | lncRNA | downstream | 363229 | 2788427 ~ 2788857 (+) | True | G329153 |
| CI01000112_02295987_02301298.mRNA | mRNA | upstream | 121249 | 2295899 ~ 2302593 (+) | True | CI01000112_02295987_02301298 |
| CI01000112_02275641_02277644.mRNA | mRNA | upstream | 145231 | 2275641 ~ 2278611 (+) | True | CI01000112_02275641_02277644 |
| CI01000112_02261335_02262540.mRNA | mRNA | upstream | 161061 | 2261335 ~ 2262781 (+) | True | CI01000112_02261335_02262540 |
| CI01000112_02240184_02240792.mRNA | mRNA | upstream | 182599 | 2237669 ~ 2241243 (+) | True | CI01000112_02240184_02240792 |
| CI01000112_02207728_02210655.mRNA | mRNA | upstream | 212885 | 2207690 ~ 2210957 (+) | True | CI01000112_02207728_02210655 |
| CI01000112_02454665_02459341.mRNA | mRNA | downstream | 29432 | 2454630 ~ 2459341 (+) | True | CI01000112_02454665_02459341 |
| CI01000112_02466191_02472040.mRNA | mRNA | downstream | 40993 | 2466191 ~ 2472567 (+) | True | CI01000112_02466191_02472040 |
| CI01000112_02483013_02484955.mRNA | mRNA | downstream | 57815 | 2483013 ~ 2485133 (+) | True | CI01000112_02483013_02484955 |
| CI01000112_02503439_02516455.mRNA | mRNA | downstream | 77674 | 2502872 ~ 2516636 (+) | True | CI01000112_02503439_02516455 |
| CI01000112_02532994_02538052.mRNA | mRNA | downstream | 104826 | 2530024 ~ 2538125 (+) | True | CI01000112_02532994_02538052 |
| TU373329 | other | upstream | 1190724 | 1232022 ~ 1233118 (+) | True | G328456 |
| TU374096 | other | downstream | 192506 | 2617704 ~ 2618151 (+) | False | G329125 |
| TU374097 | other | downstream | 192506 | 2617704 ~ 2618151 (+) | False | G329125 |
| TU374098 | other | downstream | 192506 | 2617704 ~ 2618151 (+) | True | G329125 |
| TU374184 | other | downstream | 495056 | 2920254 ~ 2931889 (+) | True | G329194 |
| TU375960 | other | downstream | 2659522 | 5084720 ~ 5096971 (+) | True | G330755 |
