RNA id: TU373329



Basic Information


Item Value
RNA id TU373329
length 1006
RNA type TUCP
GC content 0.49
exon number 2
gene id G328456
representative True

Chromosome Information


Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1232022 ~ 1233118 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CATTGACAGAAACTTACATTAACCTAACTCTGTCTGTCTGTTTTATTTATTTTCTACTAACCATATTACAGATGTGTATGCGTCGTCAGATATGTCGTCAGACACCTGAAGAGCTCAGAGACAGAATTGTGGCAAGGCACAGATCTGGCCAAGGTTACAAAAACATTTCTGCTGCACTTAAGGTTCCTAAGAGCACAGTGGCCTCCATAATCCTTAAATGGAAGACGTTTGGGACGACCAGAACCCTTCCTAGAGCTGGCCGTCCGGCCAAACTGAGCTATCGGGGGAGAAGAGCCTTGGTGAGAGAGGTAAAGAAGAACCCAAAGATCACTGTGGCTGAGCTCCAGAGATGCAGTCGGGAGATGGGAGAAAGTTATAGAAAGTCAACCATCACTGCAGCCCTCCACCAGTCGGGGCTTTATGGCAGAGTGGCCCGACAGAAGCCTCTCCTCAGTGCAAGACACATGAAAGCCTGCATGGAGGACTCCAAGATGGTGAGAAATAAGATTCTCTGGTCTGATGAGACCAAGATAGAACTTTTTGGCCTTAATTCTAAGCGGTATGTGTGGAGAAAACCAGGCACTGCTCATCACCTGTCCAATACAGTCCCAACAGTGAAGCATGGTGGTGGCAGCATCATGCTGTGGGGGTGTTTTTCAGTTGCAGGGACAGGACGACTGGTTGCAATCGAGGGAAAAATGAATGCGGCCAAGTACAGGGATATCCTGGACGAAAACCTTCTCCAGAGTGCTCAGGACCTCAGACTGGGCCGAAGGTTTACCTTCCAACAAGACAATGACCCTAAGCACACAGCTAAAATAACGAAGGAGTGGCTTCACAACAACTCCGTGACTGTTCTTGAATGGCCCAGCCAGAGCTCTGACTTAAACCCAATTGAGCATCTCTGGAGAGACCTAAAAATGGCTGTCCACCAACGTTTACCATCCAACCTGACAGAACTGGAGAGGATCTGCAAGGAGGAATGGCAGAGGATCCCCAAATCCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU373309 lncRNA upstream 22013 1209679 ~ 1210009 (+) True G328438
TU372768 lncRNA upstream 123025 1102209 ~ 1108997 (+) True G327961
TU372790 lncRNA upstream 167288 1058293 ~ 1064734 (+) True G327980
TU372767 lncRNA upstream 209370 1021579 ~ 1022652 (+) True G327960
TU372766 lncRNA upstream 210465 1021336 ~ 1021557 (+) True G327959
TU373334 lncRNA downstream 1488 1234606 ~ 1234890 (+) True G328459
TU373372 lncRNA downstream 41485 1274603 ~ 1274834 (+) True G328495
TU373381 lncRNA downstream 52979 1286097 ~ 1286491 (+) True G328504
TU373383 lncRNA downstream 54956 1288074 ~ 1288428 (+) True G328506
TU373388 lncRNA downstream 66229 1299347 ~ 1299654 (+) True G328511
CI01000112_00975908_00994568.mRNA mRNA upstream 235957 975908 ~ 996065 (+) False CI01000112_00975908_00994568
CI01000112_00967726_00973214.mRNA mRNA upstream 258543 967726 ~ 973479 (+) True CI01000112_00967726_00973214
CI01000112_00943876_00960636.mRNA mRNA upstream 271386 943876 ~ 960636 (+) True CI01000112_00943876_00960636
CI01000112_00931318_00942127.mRNA mRNA upstream 289637 931147 ~ 942385 (+) True CI01000112_00931318_00942127
CI01000112_00857771_00878662.mRNA mRNA upstream 352396 856598 ~ 879626 (+) True CI01000112_00857771_00878662
CI01000112_01304699_01321467.mRNA mRNA downstream 71185 1304303 ~ 1321708 (+) False CI01000112_01304699_01321467
CI01000112_01473681_01484126.mRNA mRNA downstream 240239 1473357 ~ 1484634 (+) True CI01000112_01473681_01484126
CI01000112_01493953_01497856.mRNA mRNA downstream 260835 1493953 ~ 1498684 (+) True CI01000112_01493953_01497856
CI01000112_01534218_01550547.mRNA mRNA downstream 301100 1534218 ~ 1550876 (+) True CI01000112_01534218_01550547
CI01000112_01711753_01717045.mRNA mRNA downstream 478114 1711232 ~ 1717114 (+) True CI01000112_01711753_01717045
TU374096 other downstream 1384586 2617704 ~ 2618151 (+) False G329125
TU374097 other downstream 1384586 2617704 ~ 2618151 (+) False G329125
TU374098 other downstream 1384586 2617704 ~ 2618151 (+) True G329125
TU374184 other downstream 1687136 2920254 ~ 2931889 (+) True G329194
TU375960 other downstream 3851602 5084720 ~ 5096971 (+) True G330755

Expression Profile