RNA id: CI01000112_01534218_01550547.mRNA


Basic Information

Item Value
RNA id CI01000112_01534218_01550547.mRNA
length 1576
RNA type mRNA
GC content 0.49
exon number 8
gene id CI01000112_01534218_01550547
representative True

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1534218 ~ 1550876 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACACACTCCTGATAACTCCTTCATGGGTTTTGTGACTGAGGAACTAAACCAGACTGAAAGATTCAACATACAGAGAGACAAAGTCAACAACATGGCTGTGGTTTACGGCAAAGAAGCCAATATGTGGAAGGTGTGCATTGTCATTTCTGTTTGTTTGACAGGTTGCCATTTAAAAGCTATCGGCGCTGTGGAGTTCCTAAACACTGACAGTTCCCTCCAGGCCAAATGGCAGCCCACTCGCTCTCATTGTGCATGTGTCACTCAGCCCAGAACCACAACTGGTAAAGAGAAGTTGCTGACGATCTTACACCGTTACATGGACATCCATGGGACAGTGTACTATGAGGCACAGCGTCCCCCAGAGGTGCCAGCATTTGTCAGGAACCATGGGTTACTGCCCCAACAGGAGTTACAGCAGCTTCTGAGAAAGGCTAAGCTCTTCATGGGATTTGGCTTTCCCTATGAAGGCCCCGCCCCTTTAGAGGCAATAGCCAATGGTTGCATATTTCTGCAGCCAAAGTTCAACCCCCCTCGCAGCTCCCTCAACCATGAGTTCTTCAGAGGCAAGCCCACGTCCAGAGAGGTGTCATCTCAGCATCCGTACACTGAACAGTACATCGGCAAACCCCACGTCATAACAGTAGACTTCAACAACTCTCAAGAATTTGAGACAGCTGTTCAAGACATACTCAAAGACAAGGTGATGCCCTTTATACCGTATGAGTACACTTGTGAAGGCATGCTGGAGAGAGTGAACGCTTACATTCAACATCAGGATTTTTGTCACCGCATCGGTCCATTCCCTAAAGCCAATGAATCCAGGTCATGGCCTGGGAATCCACCCAGTCCTTTCCTTCATCTGCCCAACTCCACAGCTTTGATCTGGGCTCCCAATATCACTGCTCCGGTCTGCTGGCCCCCTCTCAGTGCCCTCCGGCTCTTCCTGTCTCCAGAAGCCTCGTCCTGTGTGAAAACCTGCCAGGATGCCGGTCTAATCTGTGAGCCAGCTTTCTTTCCTTTCATCAACAATATGGAGGCCTTCAATGGGCTTAATGCTCAGTGTGAGTCTTTGGAAGCGGAGAAGAACCATGTGTTTCCAGCTGTACAGGTGGAGAGGAGAGAGTGTTTTCAGCAAAAGGAGCCGCTGCTGTTCAGTTGCGCTGGAGTTAGTGCCAAACACCAGCGGCTTTGCCCATGCAGAGACTACCTCCATGGCCAGGTGGCGCTGTGCAGGGACTGCCTTTGAGCTTTCCCCATAGACCTTTAAAGATGTCTGTGGTAAACTGAGGCCAGCCCTGGGCAGTCAAACATGTCAGAATCCCCAGAATGCTGGTATCTACAGCTTCATGGGAATTGCTGGACTGAGGTCATTGACGTCAAGCTTGAAGATGCATCCGAAGAAGTGTCCTCACTCTTGGTTACTTTGATCCAAAGCAAAACTTTGCCTCCAGATGAGCTACTGATGGTAAGCGAGATGGTACCCTGATGTTCACCATCTTTAGAGTCTACTGTATGTGAAAAAAAAAAAAAAAAAAGACTTGTGGTGGTTACAAGGTTGGATGGCGTGAGCCAAAA

Function

GO: NA

KEGG:

id description
K09661 MGAT5B; mannosyl alpha-1,6-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU373496 lncRNA upstream 67298 1466697 ~ 1466920 (+) True G328612
TU373495 lncRNA upstream 67909 1466032 ~ 1466309 (+) True G328611
TU373493 lncRNA upstream 72609 1461402 ~ 1461609 (+) True G328609
TU373492 lncRNA upstream 73007 1460925 ~ 1461211 (+) True G328608
TU373485 lncRNA upstream 90804 1443081 ~ 1443414 (+) True G328601
TU373472 lncRNA downstream 3735 1554611 ~ 1555332 (+) True G328588
TU373714 lncRNA downstream 127269 1678145 ~ 1678925 (+) True G328794
TU373807 lncRNA downstream 201524 1752400 ~ 1752626 (+) True G328876
TU373809 lncRNA downstream 204076 1754952 ~ 1755283 (+) True G328878
TU373810 lncRNA downstream 205312 1756188 ~ 1756537 (+) True G328879
CI01000112_01493953_01497856.mRNA mRNA upstream 35534 1493953 ~ 1498684 (+) True CI01000112_01493953_01497856
CI01000112_01473681_01484126.mRNA mRNA upstream 49584 1473357 ~ 1484634 (+) True CI01000112_01473681_01484126
CI01000112_01304699_01321467.mRNA mRNA upstream 212510 1304303 ~ 1321708 (+) False CI01000112_01304699_01321467
CI01000112_00975908_00994568.mRNA mRNA upstream 538153 975908 ~ 996065 (+) False CI01000112_00975908_00994568
CI01000112_00967726_00973214.mRNA mRNA upstream 560739 967726 ~ 973479 (+) True CI01000112_00967726_00973214
CI01000112_01711753_01717045.mRNA mRNA downstream 160356 1711232 ~ 1717114 (+) True CI01000112_01711753_01717045
CI01000112_01753138_01753764.mRNA mRNA downstream 202080 1752956 ~ 1754407 (+) True CI01000112_01753138_01753764
CI01000112_01831462_01857713.mRNA mRNA downstream 280586 1831462 ~ 1858703 (+) True CI01000112_01831462_01857713
CI01000112_01865388_01878028.mRNA mRNA downstream 314225 1865101 ~ 1878188 (+) True CI01000112_01865388_01878028
CI01000112_01883455_01914770.mRNA mRNA downstream 332368 1883244 ~ 1914775 (+) True CI01000112_01883455_01914770
TU373329 other upstream 301100 1232022 ~ 1233118 (+) True G328456
TU374096 other downstream 1066828 2617704 ~ 2618151 (+) False G329125
TU374097 other downstream 1066828 2617704 ~ 2618151 (+) False G329125
TU374098 other downstream 1066828 2617704 ~ 2618151 (+) True G329125
TU374184 other downstream 1369378 2920254 ~ 2931889 (+) True G329194
TU375960 other downstream 3533844 5084720 ~ 5096971 (+) True G330755

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050723 True 1530 mRNA 0.53 9 NC_007114.7 59117136 ~ 59167824 (+)