RNA id: TU377662


Basic Information

Item Value
RNA id TU377662
length 247
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G332201
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 32067 ~ 32313 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGGTGTGCATGTTGAGACAAAACAATGGCATTGACATTTTAAGATATGCCAGGGCAAGTTACTTTCATTGAAAACAGCTCAAACATGCATTTTAGTCTGAGACTAGAGTAAGCCTCATCTGTGAAACTGGGGTAAATGTTTCTCTTATTCTTGTTTCCCCTGTTCATTTTCAATTGATGATCATTATTGACCAGTAAAAACTGTCAGTCAGTTTAAAAATAAATGCAACACCTGTCCTAATTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377661 lncRNA downstream 402 31448 ~ 31665 (-) True G332200
TU377674 lncRNA upstream 16553 48866 ~ 49254 (-) True G332210
TU377681 lncRNA upstream 20373 52686 ~ 52993 (-) True G332213
TU377683 lncRNA upstream 21493 53806 ~ 54184 (-) False G332214
TU377682 lncRNA upstream 21633 53946 ~ 54184 (-) True G332214
TU377684 lncRNA upstream 23503 55816 ~ 56115 (-) True G332215
CI01000113_00077172_00080517.mRNA mRNA upstream 42910 75223 ~ 80517 (-) False CI01000113_00077172_00080517
CI01000113_00122344_00130639.mRNA mRNA upstream 89541 121854 ~ 130707 (-) True CI01000113_00122344_00130639
CI01000113_00254945_00255661.mRNA mRNA upstream 222545 254858 ~ 255709 (-) True CI01000113_00254945_00255661
CI01000113_00268929_00271262.mRNA mRNA upstream 236535 268848 ~ 271294 (-) True CI01000113_00268929_00271262
CI01000113_00283931_00284691.mRNA mRNA upstream 251549 283862 ~ 284723 (-) True CI01000113_00283931_00284691
TU377671 other upstream 15677 47990 ~ 49485 (-) False G332210
TU377672 other upstream 15677 47990 ~ 49254 (-) False G332210
TU377673 other upstream 15677 47990 ~ 49194 (-) False G332210
TU377621 other upstream 357914 390227 ~ 446837 (-) True G332160
TU378176 other upstream 2114901 2147214 ~ 2148558 (-) True G332649

Expression Profile