RNA id: TU376817


Basic Information

Item Value
RNA id TU376817
length 264
lncRNA type antisense_over
GC content 0.58
exon number 4
gene id G331504
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 940526 ~ 942201 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCCCGTCCCCCTGGATGTGTCCTGCTTGTCCTCGTCTCGAGGTTCATGCTGGGTCTTGTGGGTCAGGTGATTATGAGAACACTCACCATATCACCTGGGTCTCCGCTGGGTCCTGGGGGGCCTGTGATGCCAGGAATTCCTGGAAGACCTGGTAGTCCTGGTGGGCCAGGAGGTCCTTCAAAATATGTGCCTGGTTCAACGACAGCTGGCTCTCCCTTCTGTCCTTTCTCAAATCGCATGCCCTCTCCATCCCATGTGCCCGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376820 lncRNA upstream 8152 931090 ~ 932374 (+) True G331506
TU376801 lncRNA upstream 11739 925654 ~ 928787 (+) True G331491
TU376783 lncRNA upstream 52658 887668 ~ 887868 (+) True G331473
TU376764 lncRNA upstream 70777 869338 ~ 869749 (+) False G331456
TU376765 lncRNA upstream 70777 869338 ~ 869749 (+) True G331456
TU376824 lncRNA downstream 11790 953991 ~ 973533 (+) True G331510
TU376851 lncRNA downstream 35108 977309 ~ 977535 (+) False G331528
TU376853 lncRNA downstream 35108 977309 ~ 977746 (+) True G331528
TU376855 lncRNA downstream 37123 979324 ~ 979718 (+) True G331529
TU376856 lncRNA downstream 43882 986083 ~ 986441 (+) True G331530
CI01000113_00659612_00684227.mRNA mRNA upstream 255496 659612 ~ 685030 (+) True CI01000113_00659612_00684227
CI01000113_00645261_00649236.mRNA mRNA upstream 290711 645261 ~ 649815 (+) True CI01000113_00645261_00649236
CI01000113_00629848_00638123.mRNA mRNA upstream 302094 628843 ~ 638432 (+) True CI01000113_00629848_00638123
CI01000113_00574016_00587822.mRNA mRNA upstream 352444 573455 ~ 588082 (+) True CI01000113_00574016_00587822
CI01000113_00568754_00569821.mRNA mRNA upstream 370010 568410 ~ 570516 (+) True CI01000113_00568754_00569821
CI01000113_00997825_01005290.mRNA mRNA downstream 54662 996863 ~ 1005399 (+) True CI01000113_00997825_01005290
CI01000113_01072283_01091398.mRNA mRNA downstream 129704 1071905 ~ 1091730 (+) True CI01000113_01072283_01091398
CI01000113_01110162_01112498.mRNA mRNA downstream 167961 1110162 ~ 1112502 (+) True CI01000113_01110162_01112498
CI01000113_01120464_01124821.mRNA mRNA downstream 178197 1120398 ~ 1125031 (+) True CI01000113_01120464_01124821
CI01000113_01127641_01134250.mRNA mRNA downstream 185440 1127641 ~ 1134481 (+) True CI01000113_01127641_01134250
TU376797 other upstream 18393 917735 ~ 922133 (+) True G331487
TU376780 other upstream 23989 913392 ~ 916537 (+) True G331470
TU376556 other upstream 605905 334158 ~ 334621 (+) True G331260
TU376961 other downstream 304090 1246291 ~ 1246573 (+) True G331615
TU376908 other downstream 482360 1424561 ~ 1425441 (+) True G331578
TU377162 other downstream 720584 1662785 ~ 1663255 (+) True G331767
TU377129 other downstream 725801 1668002 ~ 1668035 (+) True G331759
TU377145 other downstream 725801 1668002 ~ 1782301 (+) True G331759

Expression Profile