RNA id: CI01000113_00629848_00638123.mRNA


Basic Information

Item Value
RNA id CI01000113_00629848_00638123.mRNA
length 2394
RNA type mRNA
GC content 0.41
exon number 4
gene id CI01000113_00629848_00638123
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 628843 ~ 638432 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATAAAACGCACAGATCAGAAGATCTCGTTTGCATCGGTCGGAGGACAAGTCAATGAGTTAAACAAAACCAAAACCAAAAGAGAAGATCATCTGGTGATAACCTAGGAGGTAAGAGAATTTTTTGTTCATAATGTGTTTTGTTTTTTTCATAATCATGGTTATTTTTTTTAATGTATTTATTTAAATTAATGATGTGTCCTTCTGTTGGAATTCCCCTAAAGTATTACTTTGGTATTTGATTAAGCCTCAAAATATTTCAAATAAATTTGAAATAATATTATAAATATATATATATTTTTCTGATCAATACGGTTCTTTAATAAGTGAAACTTTTTCAAAATATATATTATGATATTTCACACTTTAGAAACTTTTTCTTAACATTTTAACATACTTAGTACATTAGTTTTGGTAATTTGGTATTATACTTCCATAGACATCAATGGTCTTTTTAGTTCTTTTGTTTAGTTGTTTTTAGTAGTTGTCTCAGTCAGTGTTTAGATTGTTAATTGCTTATGACATTTATGATGTGTAACAAAGCTTGTCATTTTCATCAGTATTGACTTTAGCAATTGATTTTGACGATCAGATGAAACGATGGGTTGACTCAGGCTCTGTTTCTGTTGACATGCTAATTAACCCAAGAAAAGGCAAAACTGTGTTTTACCCCCCATCGTTAAACAGAAGCATCTGGCATGCATCAAAAACTGCAGGCCTCTTCAGTTCCGTTCATGACTGACTGAGTGGATGTTAAAAAAAGTTACATTGTTTATCTGGTTTAAACTCAGTGGAAAGTTTTGCACATTTTACATATAACTGTTTATTACATTTTCACAAGTCAGATTTGGTCTAAACATTGAGTTACTAAAGAAAAGATGCTAGAAATGGCTTCAATGAAGTCAAACTGTTCATTTCAGATTTATGCTTGTGTTAATTGCTAAGACTTTGTATTATTTGTTTGTTAGGATTTTATTGGACAGTTTCTTGGAACAGCAGCACACTCATGGAAATTCCAGTGACTCGTGCCTTGGTTCTCCTGCTGTTTTTTGGTGGGGTGTGCTTTGTAGAGGCCCGCAAGGAAGCCTCCAACGCGGACACTTCCAAGGGTGATGATGTAAGTCACAAAAGACAGTCTCGAGAATCAGAGAATAAGCCGAGCCGCTGTTCCTACACCTTCATCGTACCTCAGCAGAAGTTAACTGGGGCGCTTTGCGTGAGCACCGAGACGGCACGTGTCAACCGCTCTGAGATGGCGTCCCTGCGTGCACTTCTGGACCGGCAGCAGGAACAGCTGGATACAATGCGTGGCCAGCTGGAGCTGGAAGGCGCACTGGCCAATGAAATGAGAGTTCTGCGCAGGGAGAGCGTCAGCATGAACGCCCGCATCACGCAACTCTACGCCCAACTGCTGAACGAGATCATCCAGAAGAAGGATCAGACTTTGGAGCAGCGGCGGCTTGAAAGTTTGGTGCTTAACGCGACATCCCAGGTGTTTCAGGTGTCCAGCAGTTACAGAGACCTGGAAAAGAAGTATGACACACTCACTTCTCTAGTGAGCAACCAGAGCCAGCTAATCACACACCTGGAGAAACAGTGCCAGCTCAAGAATCCTGCTAAAGCACTGCAGCAAGGCTTTGGGAATCTGGATGGAGAATACTGGCTGGGTTTGGAGCACCTGCACTGGCTCACCTCTCAGGCCACCTACAAGCTGCGAGTAGCTATGGAAGACTGGCAAGGACGACAGGTGTTTGCAGAGTACGACAGCTTTCAGGTGGAACCGGAGAGTGACTGGTATCGTCTACGGTTAGGCAGTTACCAAGGCAGTGCAGGAGACTCCCTCTCTTGGCACAACAATAAAGCGTTCACCACTCTGGACCGTGATAAGGATGCCTACTCAGGTAACTGCGCTCATTACCAAAAGGGCGGTTGGTGGTACCACATGTGTGCCCACTCCAACCTGAATGGTGTGTGGTACAGAGGCGGCCATTACAGAGGTCGATACCAGGATGGTGTGTACTGGGCGGAGTTCCACGGAGGCTCATATTCCCTAAAGAAAGTGGCAATGATGATCAAACCCGCCTAAGCTGAACCAAAACAACTCAGCAGAGCAGAGACCTTTTCTACACAAAGATGTGACAATGAGCACTAAATGTTCTTGTGGAGCTTCAGGTTGTTCCATTGCCAATATAGTCTTGAAGTTTTCCTAATGTTGTTAAAACAAAGACATGATTTGAATATGTCTGATGCAGTTTTGTATTTTGGTATATATGCATTGGACTGCATTGTGTTAAAATGTCTTATTTTTGGATAATTGCGTATAAAATGTACAAATTTTTAGTTACTACCAGAGTATCATCCAGACTACTTTCTATTTTTTTCTTCATTCCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376659 lncRNA upstream 93562 534943 ~ 535281 (+) True G331360
TU376658 lncRNA upstream 94530 534077 ~ 534313 (+) True G331359
TU376657 lncRNA upstream 99911 528686 ~ 528932 (+) True G331358
TU376653 lncRNA upstream 110689 517802 ~ 518154 (+) True G331354
TU376652 lncRNA upstream 111086 517286 ~ 517757 (+) True G331353
TU376691 lncRNA downstream 66081 704513 ~ 704739 (+) True G331391
TU376697 lncRNA downstream 76014 714446 ~ 714897 (+) True G331397
TU376705 lncRNA downstream 85355 723787 ~ 724001 (+) True G331405
TU376706 lncRNA downstream 87027 725459 ~ 725690 (+) True G331406
TU376720 lncRNA downstream 131862 770294 ~ 776185 (+) True G331413
CI01000113_00574016_00587822.mRNA mRNA upstream 40761 573455 ~ 588082 (+) True CI01000113_00574016_00587822
CI01000113_00568754_00569821.mRNA mRNA upstream 58327 568410 ~ 570516 (+) True CI01000113_00568754_00569821
CI01000113_00524568_00527858.mRNA mRNA upstream 100545 523876 ~ 528298 (+) True CI01000113_00524568_00527858
CI01000113_00455243_00457236.mRNA mRNA upstream 170149 454875 ~ 458694 (+) True CI01000113_00455243_00457236
CI01000113_00428584_00446187.mRNA mRNA upstream 182199 428260 ~ 446644 (+) True CI01000113_00428584_00446187
CI01000113_00645261_00649236.mRNA mRNA downstream 6829 645261 ~ 649815 (+) True CI01000113_00645261_00649236
CI01000113_00659612_00684227.mRNA mRNA downstream 21180 659612 ~ 685030 (+) True CI01000113_00659612_00684227
CI01000113_00997825_01005290.mRNA mRNA downstream 358431 996863 ~ 1005399 (+) True CI01000113_00997825_01005290
CI01000113_01072283_01091398.mRNA mRNA downstream 433473 1071905 ~ 1091730 (+) True CI01000113_01072283_01091398
CI01000113_01110162_01112498.mRNA mRNA downstream 471730 1110162 ~ 1112502 (+) True CI01000113_01110162_01112498
TU376556 other upstream 294222 334158 ~ 334621 (+) True G331260
TU376780 other downstream 274960 913392 ~ 916537 (+) True G331470
TU376797 other downstream 279303 917735 ~ 922133 (+) True G331487
TU376961 other downstream 607859 1246291 ~ 1246573 (+) True G331615
TU376908 other downstream 786129 1424561 ~ 1425441 (+) True G331578
TU377162 other downstream 1024353 1662785 ~ 1663255 (+) True G331767

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00052141 True 1983 mRNA 0.47 6 NC_007114.7 54524227 ~ 54544612 (-)
bowfin (Amia calva) AMCG00008463 True 1563 mRNA 0.65 6 CM030126.1 1862614 ~ 1870208 (-)