RNA id: CI01000171_00871295_00874260.mRNA


Basic Information

Item Value
RNA id CI01000171_00871295_00874260.mRNA
length 846
RNA type mRNA
GC content 0.46
exon number 5
gene id CI01000171_00871295_00874260
representative True

Chromosome Information

Item Value
chromosome id CI01000171
NCBI id null
chromosome length 912836
location 871053 ~ 874312 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCCCTCGAGGCCCAGATTCCCACACACTCTGGACTGAGCTCTGCAGTAGTCATGCCAACCACCGTGCTGGGATTGTTGGGAGTTTTGCTCTGTGTCCTTGCTGTTAGTTCTGAGGTCACGCCACAGCCCGACTTCAACATCAAAGGGGTGGCTGGGAAATGGTACCTGATTGGTTTTGCCACCAATGCCGAGTGGTTTGTCGCTCGTAAGGCGAACATGAAGATGGGAGTCGCCATGCTGACACCGACTGATGAAGGAGATCTGAAGATGGCATATTCCAGTCTCAATCCTGATGGCACATGCTGGAAGATGTACCATCTCGCTCAAAAGTCTGATTTTCCTGGAATATTCAGCTTCCGCAGTGAACGCTGGGAGACTGACAATAAAATGTGTATTGTTGATGTTAAGTATGATGAATACGCTTTGATCCACACTGTCAAGACCAAGGCTGACTCCACTACAGTGCTCGACAAACTTTACGGCCGAACACCCGACCTGAGCCAGGATGTCTTGGACAAGTTCACTGCGTTTTCTCTGGAGCAAGGTGTTCTGCCGGAGAACATCGCCATCCTGCCTAAAAATGGTAAAACGGCATGTGTATAGAAAGCAAGTAACTGATTAATAACCTCTTCAGACCTGACCTGAACATCTTTTCTCTATAGACGAGTGCCCTTGATGAGCTGATTTGAAGATCCTCTCTGGCCCCTGAATCCTGATTTACTCATTACTGTAGTGAAACATTTAAAGTGCCCTCTAGTGTTAAGCTCTCAGTATCAGTCCTTTTTACCCTCTTAAAGTTCTTTTATTCATTTCCTATCATTTCTTCATGAGTTTGGACCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU425183 lncRNA downstream 26472 844334 ~ 844581 (-) True G372275
TU425182 lncRNA downstream 37783 830709 ~ 833270 (-) True G372274
TU425150 lncRNA downstream 125606 740314 ~ 745447 (-) True G372244
TU425167 lncRNA downstream 150975 719787 ~ 720078 (-) True G372259
TU425165 lncRNA downstream 157947 712791 ~ 713106 (-) True G372257
CI01000171_00824754_00842657.mRNA mRNA downstream 28135 824647 ~ 842918 (-) True CI01000171_00824754_00842657
CI01000171_00788022_00797188.mRNA mRNA downstream 73865 787746 ~ 797188 (-) True CI01000171_00788022_00797188
CI01000171_00732682_00786057.mRNA mRNA downstream 84978 732527 ~ 786075 (-) False CI01000171_00732682_00786057
CI01000171_00663431_00666879.mRNA mRNA downstream 204174 663431 ~ 666879 (-) True CI01000171_00663431_00666879
CI01000171_00659729_00660264.mRNA mRNA downstream 210789 659729 ~ 660264 (-) True CI01000171_00659729_00660264
CI01000171_00881122_00881454.mRNA mRNA upstream 6501 880813 ~ 881454 (-) False CI01000171_00881122_00881454
TU424987 other downstream 225679 586777 ~ 645374 (-) False G372104
TU424988 other downstream 225679 587626 ~ 645374 (-) True G372104
TU425003 other downstream 329734 518420 ~ 541319 (-) True G372115
TU425022 other downstream 399745 453246 ~ 471308 (-) True G372133
TU425014 other downstream 441171 383328 ~ 429882 (-) True G372125
TU425130 other upstream 6434 884684 ~ 884846 (-) True G372229

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00059915 True 907 mRNA 0.45 6 NC_007116.7 4482437 ~ 4493502 (-)