RNA id: CI01000171_00788022_00797188.mRNA


Basic Information

Item Value
RNA id CI01000171_00788022_00797188.mRNA
length 2700
RNA type mRNA
GC content 0.49
exon number 16
gene id CI01000171_00788022_00797188
representative True

Chromosome Information

Item Value
chromosome id CI01000171
NCBI id null
chromosome length 912836
location 787746 ~ 797188 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCCGACAGCGATGATGAGTACGACCGCAGACGCAGAGACAAATTCCGCAGAGAGAGAAGCGACTATGATCGTTCGCGGGAGAGAGAGGACCGCCGGAGAGATGACTGGAATGACAGAGAGTGGGACAGGGGCCGTGAGCGGCGCAGCCGAGGAGAGTACCGGGACTACGAGAGGGGCAGACGAGAGAGATTTTCCCCTCCACGTCATGACATGAGCCCCCAGCAGAAGCGCATGAGGAGAGACTGGGATGACCATGGAGGTGACCCTTACCATGGTGGCTATGATCTGGGTTATGGTGGTGGTGGAGGACCCAGCTATGCCCCTCCTCAGCCGTGGGGTCACCCTGACATGCACCTCATGCAGCCCCATCATGGCATCCCCATTCAGGCCAGGCTGGGAAACATCCACGATATGGATCTTGGTCCTCCCCCTCCTGTGATGAAGACCTTTAAGGAGTTCCTGCTGTCTCTGGATGACTCTGTGGATGAGACTGAGTCGGTCAAACGCTACAATGAGTACAAGATCGATTTTAGGCGTCAGCAGATGCAGGACTTCTTCCTGGCCCATAAAGATGAAGAGTGGTTCCGTTCAAAGTACCACCCGGATGAGGCTGGGAGGCGCAAAGCAGAATCCCACAGTGCTCTACAGAACCGGTTGAGCGTCTACATGTATCTCATGGACAATAGCTGGTTTGAGTCCGTCTCTTTGGACATAGAGCGTGCTCCACAAATCACCAAGATTTTAGATGCAGCCGTGATAAAGATGGAAGGAGGAGGGGAAAATGACCTGCGCATCCTGGAACAGCCCAGTGAGGAAGAGGAGGAGCGGGAGCGGGAGCGTGAGAGACTCTCATCTGGTGGACCTGGTTCTGAACCTCCCAAACGGGATGAGCCCAGGCCTGTGGATGTTGAGCGCAAACCCTCTATTGAAAAAGACAAGATGGGAGAGGGTGATGAGGGGACTGAGAAGGATGCAGCTGCTTCTGCAGGAGGAAGTGAAGGAGAGAAGACTGAGAAAGAAGCACCTGCCGAACCAATTCCAGAACCCAAGAAGCTGTGTCGACGTTATCCAGGATTTATGCGCGTTTGTTTGTCAGAACCACAGCCAGAGCGTAGGTTTTTCAGGCGTTGCTGGGTGACCTTCGACAGAAGTGTGAACATCAAAGAGATCTGCTGGAACCTGCAGAACATCCGGGTGAGTTCTACAATCATCGGCCGAAGAACCATCATGCGTAGCAAACGTCTCGCTCATTCTCTTCTCCTCTTCCTCTTTGACCAGCTGCGGGACTGTGAGTTGGCTCCCGGGGTCAATCGAGATTTGGCGCGTCGTGTACGTAATGTGAACGGAATCACTCAGCATAAGCAGGTTCTCCGTAATGACATCAAGATGGCTGCTAAACTGATCCATGCACTGGATGACAGGGAGAGGCTCTGGAGCCACAAACCCAGAGAAGAGACAGCCGCTCTAGAGATCCCTGCTCAGAACCCCATTCTGAAAAACATCACTGATTACCTCATAGAGGAAGTGAGTGCAGAGGAGGAAGAGCTTCTAGGTAGTGCAGGAGGAGCCGAATCCGAGGACGGATCCAAAGAGGGAAATCCCACCGAGATTACTGTGGAGAGAGATGAAAAACTTGTCAAGGTGTTGGATCGTCTCCTCTTCTATCTGCGTATCGTACACTCTATTGACTATTACAACACCTGTGAGTACCCGAGTGAGGATGAGATGCCAAACCGCTGTGGCATTATCCATGTGCGAGGGCCTATTCCCCCCAACCGCATCACTCACAGAGAAGTTTCTGACTGGCAAAAGACATTTGAAGAGAAGCTGGGACACTTGTTCAGTGTGAAGGAAAGCCTGTCTGAAGATGAGGCAGCGAAGATGGGCCGCAAAGATCCAGAACAGGAAGTTGAGAAGTTTGTGTTGGCCAACACACAGGAACTAGGCAAAGACAAGTGGCTTTGTCCTCTAAGTGGCAAAAAGTTTAAGGGCCCAGAGTTTGTGAGGAAGCACATCCTAAACAAACATGGTGACAAGATTGAGGAAGTAAAGAAAGAGGTGGTCTTTTTCAACAACTTCCTGATGGATGCAAAAAGACCCTCCATCCCAGAGATGAAACCACCACCCCCTCCAGGTCCAGGACAAGGAGTGCTTTCACCTGGAGGTCTTCCATTCCCACCTCAGGCTCCTCAAGGTCTCATGGGTTTTGGCCAGCCCAGACCTCCAGTTATGGGTTATGGAGGTGGTCCTCCTTACCCACCTAACCAGTATGGTGGAGGTGGCAGGGGCAACTACGACAACTTCCGCGGACAAGGCGGTTACCCTGGAAAACCTAGAAACAATCGAATGATGCGTGGGGATCCTCGCAATATCATTGAATATCGTGATTTAGACGCACCAGATGATGTGGACTTCTTTTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTCTCAGCATTTTCTTGTCATTCATTCCAGAAGCTGCCCATTACTGTCTTTCTGTTCACTCATGTATTACAGTAGCGCTTCAGCTGAAGTGAACGCATGTCCTTTACGTTCTCAGTGTTATAGATTGAGCTTGTGCTTGTGGCCTTTTTTTCTTCCAATAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU425150 lncRNA downstream 42299 740314 ~ 745447 (-) True G372244
TU425167 lncRNA downstream 67668 719787 ~ 720078 (-) True G372259
TU425165 lncRNA downstream 74640 712791 ~ 713106 (-) True G372257
TU425143 lncRNA downstream 79083 707344 ~ 708663 (-) True G372237
TU425158 lncRNA downstream 89717 697813 ~ 698029 (-) True G372251
TU425182 lncRNA upstream 33521 830709 ~ 833270 (-) True G372274
TU425183 lncRNA upstream 47146 844334 ~ 844581 (-) True G372275
CI01000171_00732682_00786057.mRNA mRNA downstream 1671 732527 ~ 786075 (-) False CI01000171_00732682_00786057
CI01000171_00663431_00666879.mRNA mRNA downstream 120867 663431 ~ 666879 (-) True CI01000171_00663431_00666879
CI01000171_00659729_00660264.mRNA mRNA downstream 127482 659729 ~ 660264 (-) True CI01000171_00659729_00660264
CI01000171_00650378_00659595.mRNA mRNA downstream 128151 650311 ~ 659595 (-) True CI01000171_00650378_00659595
CI01000171_00608319_00641115.mRNA mRNA downstream 145993 607794 ~ 641753 (-) True CI01000171_00608319_00641115
CI01000171_00824754_00842657.mRNA mRNA upstream 27459 824647 ~ 842918 (-) True CI01000171_00824754_00842657
CI01000171_00871295_00874260.mRNA mRNA upstream 73865 871053 ~ 874312 (-) True CI01000171_00871295_00874260
CI01000171_00881122_00881454.mRNA mRNA upstream 83625 880813 ~ 881454 (-) False CI01000171_00881122_00881454
TU424987 other downstream 142372 586777 ~ 645374 (-) False G372104
TU424988 other downstream 142372 587626 ~ 645374 (-) True G372104
TU425003 other downstream 246427 518420 ~ 541319 (-) True G372115
TU425022 other downstream 316438 453246 ~ 471308 (-) True G372133
TU425014 other downstream 357864 383328 ~ 429882 (-) True G372125
TU425131 other upstream 66091 863279 ~ 884846 (-) True G372229
TU425132 other upstream 66091 863279 ~ 884846 (-) False G372229
TU425130 other upstream 83558 884684 ~ 884846 (-) True G372229

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00059913 True 3030 mRNA 0.52 20 NC_007116.7 4253929 ~ 4297459 (-)