RNA id: CI01000171_00659729_00660264.mRNA


Basic Information

Item Value
RNA id CI01000171_00659729_00660264.mRNA
length 413
RNA type mRNA
GC content 0.52
exon number 2
gene id CI01000171_00659729_00660264
representative True

Chromosome Information

Item Value
chromosome id CI01000171
NCBI id null
chromosome length 912836
location 659729 ~ 660264 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCTGCTGGATGTGTACGGTTTTGAATGTTTCCTCCTGAACAACCTGGAGCAGTTGTGTATTAATTACGCTAACGAGAAGCTGCAGCAGCACTTTGTGGCTCATTACCTGAAGGCCCAGCAGGAGGAGTATGTGACCGAAGGGCTGCAGTGGTCCTTCATACGTTATCAAGACAACCAGGGCTGCCTGGACCTGATTGAAGGCAGTCCCTCCAGCATTTTCTCCCTGCTCAATGAGGAGTGTCGTCTGAACAGAGCATCGGATGCGAAGCAGTTCCGTGTGCGTCTGGAGAAGGAGCTGTCAGATAATGCCAACTTCAGCTGGGACAAATTCAGCAAAGATCCCCATTTCACTGTGGCCCACTACGCAGGCAAAGTCAGCTACCAGATCGAGGGCATGATGGAGAAGAACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU425120 lncRNA downstream 15978 643105 ~ 643751 (-) True G372219
TU425025 lncRNA downstream 79650 572585 ~ 580079 (-) True G372136
TU425031 lncRNA downstream 90647 568633 ~ 569082 (-) True G372142
TU425024 lncRNA downstream 142706 516732 ~ 517023 (-) True G372135
TU425110 lncRNA downstream 144731 514790 ~ 514998 (-) True G372212
TU425154 lncRNA upstream 33432 693696 ~ 694083 (-) False G372247
TU425153 lncRNA upstream 33517 693781 ~ 694083 (-) True G372247
TU425158 lncRNA upstream 37549 697813 ~ 698029 (-) True G372251
TU425143 lncRNA upstream 47080 707344 ~ 708663 (-) True G372237
TU425165 lncRNA upstream 52527 712791 ~ 713106 (-) True G372257
CI01000171_00650378_00659595.mRNA mRNA downstream 134 650311 ~ 659595 (-) True CI01000171_00650378_00659595
CI01000171_00608319_00641115.mRNA mRNA downstream 17976 607794 ~ 641753 (-) True CI01000171_00608319_00641115
CI01000171_00530302_00562539.mRNA mRNA downstream 96484 528920 ~ 563245 (-) False CI01000171_00530302_00562539
CI01000171_00506482_00509615.mRNA mRNA downstream 150003 505755 ~ 509726 (-) True CI01000171_00506482_00509615
CI01000171_00435644_00442897.mRNA mRNA downstream 216685 435087 ~ 443044 (-) True CI01000171_00435644_00442897
CI01000171_00663431_00666879.mRNA mRNA upstream 3167 663431 ~ 666879 (-) True CI01000171_00663431_00666879
CI01000171_00732682_00786057.mRNA mRNA upstream 72263 732527 ~ 786075 (-) False CI01000171_00732682_00786057
CI01000171_00788022_00797188.mRNA mRNA upstream 127482 787746 ~ 797188 (-) True CI01000171_00788022_00797188
CI01000171_00824754_00842657.mRNA mRNA upstream 164383 824647 ~ 842918 (-) True CI01000171_00824754_00842657
CI01000171_00871295_00874260.mRNA mRNA upstream 210789 871053 ~ 874312 (-) True CI01000171_00871295_00874260
TU424987 other downstream 14355 586777 ~ 645374 (-) False G372104
TU424988 other downstream 14355 587626 ~ 645374 (-) True G372104
TU425003 other downstream 118410 518420 ~ 541319 (-) True G372115
TU425022 other downstream 188421 453246 ~ 471308 (-) True G372133
TU425014 other downstream 229847 383328 ~ 429882 (-) True G372125
TU425131 other upstream 203015 863279 ~ 884846 (-) True G372229
TU425132 other upstream 203015 863279 ~ 884846 (-) False G372229
TU425130 other upstream 220482 884684 ~ 884846 (-) True G372229

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00059904 True 1722 mRNA 0.47 14 NC_007116.7 3954614 ~ 3991655 (-)
bowfin (Amia calva) AMCG00005639 True 753 mRNA 0.52 6 CM030142.1 6326196 ~ 6328995 (-)
mexican tetra (Astyanax mexicanus) TU421377 True 1057 lncRNA 0.51 8 NW_019172844.1 2688958 ~ 2695749 (+)