RNA id: TU425025


Basic Information

Item Value
RNA id TU425025
length 4485
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G372136
representative True

Chromosome Information

Item Value
chromosome id CI01000171
NCBI id null
chromosome length 912836
location 572585 ~ 580079 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

NNNNNTGGCTCACATCTGAATGTAAAGCATGGCCTCATGCAATTCATTGTTTTCTTGAAAATTAGATTGTATAATCTGTGAGCTGTCGAGTCTTTCTCCCGCTCTGTCACAACACCATCATCATGCTCGGCTCTTGTCAGATACTCCGGTCGGGTGCTGCGCTGCTGTCCTTGAACTTCCTCTCAGACACTCTCTGCTCACACTAAAACAGAAACCTGCTGTTGCCGTGGATACACAAAGACAGCCGTCTGCACCAACAGTTCACTAAAAGATATTGACACCCTCCATGTAATCCAATCCTGAACTAAAAACACTCGATTACACATGTGATTCAACTCATGTCTGTAGAACGCACAGCGATATTTTTCTCATTCATTTTCTCTAAAAGGATTTCAGTATGGAGTTGTAGTTCTATCTTGGAAGGTTTTTCTGCAAATCAGTTTTCTTTATAAAGAAAAATAATGCGATTTTTACTTCTGTATTTTAACTTTGCTCTCCAAGTTCGTTTAACATTAACTATCGGATGGGCAGGTGAACTCGTGAACCCTACATATGAGCAATAGTACTAGTGATGGTTGACTTAGCAAACAGCACTAATTATCTTCCCACCTGATGTGAAAAGCAGTGTGTGAAGTGCTGAGGAAGATAATAACTGGGTTTCTGTTCTAAATCAAGATCTAAACCGCGGCGCGAGTGGAGACTGTACGTATAATCCGACCAATCGCAGCGGAGCGTCATGCATGAGCTCTCCCACTGCCAAACCTGATTACCATGTTCCTCCTCGCTTATTCCAATGATGTGAACATGTGAATTCATGAATGCTTTATTAGAGAGCTGTAATGAGCACATTGTTGCTGTTCTACTTTGGTCTTCATCATTTTTGTCTTTGTAAAGTCCCAGTGAGTCTGGCTGCTCTTTTTTTAACTTTATTTGTCTCGCCCTTGCCCCGTTTCTGTTGTCCTCGCTCTCGCACACATGCCGTGTTCTTGCTGGGTTATTTCTGAGATGATGGGCATCAGTGTTATAGTAGTATCATTGATATACTTTTGTTAAAGGGGTCATGGACTGCATTTCTTAAAAATGTTATAATGTTCTTTGAGGTCCACTTATAATTTTACCCAGATTTTTACATCAAAAACATCCTAATTTAGAATTAATAGGCTATTTTCTATCCTGTTTTTGACCCTATCTTTAGCCGTGTTTCCACCGTAGGAACTTTCCCCAGGAACTAAGGACTTTGGGGTGGTACTCGGTGTGTTTCGACAGCAGGGACCAGGGTCTAAATAAAGTTTCGGGTAAAAAAATCCCCCCTCAGAAAGTCCCTGCTCATGAGGTAGTTCTTTTTCAAAGTTCAGGAACTTTCGGGGGTGGGACTTTGGCGCTGAACATGCTGATTGGTTGAGTTCATGCAGCATTTTATTTCACCATTTTTAAAAGTCTATTGCGGTGCGTGCAGTAAGAGCTGTTTGCTATTCGAATCAACAATGGACTTTAAAAATACGGCCGATGGACCGATGACAAGGTTCAGGCTTTATTAATCAGAAATGTGGAGGATAAAATCCAGCGGGAACTGGAAAGTCACGTGCAGTCACCGGACTAATTTGCCTAATCTTCACGGTACTTTAGACCGCGATGGAAATGCTGACAGCAACAGGTCTGGGGGGAAAAAAGTTCAGAAGCAAATTGATTTCGGTGGAAATGAGGCTTTTGAAACACTCGTTTTTATAGACGTGCCGCATTCAAGCCCTCTTCTATGATTGGGTAACAGTTTTGCATATTAAAATAATTTTCAACGTCCCTGCCATTACGCTTGTGGAATTGTTTTGCTTTTTTACCAAAATAAAGAGCAAAACATCCACATTCTGTGTGCAATTGATGCTTTATCTGTATATTTGGTCTCTGTGCCACAGAGAATGATGGGAAATGTAGTTTTGTGCTGCCTGATTTTTAGCATCTCTTTGACTCAATTGAGAATTTAAACATGTAATCTAATAAGGTCTTTTAAAGTCCCCCTGCAGTCAATAATTTTATCCCTTAAAACACATCTTTGTTAATCAAAATGACATATTTAAATGTTTTTTCCTGTGAATATAATGTCTTTGTGTCTTAAAATAGCTTGACTGTAACTCTACACCCTTGCTTTATTTAGATTAGAAAATGCGGATTCATGAATATGCAAATTAGCACCGCCTCCACTCACTCAAACCAGCTCGGATTGCCTGATCCACACGGTCAACTTTAAACACTACACGAATGGCAAGCAGAAATATTGGTTTAATTCAGCCATATATATGTTTGAAGCAGAAACTGATTCAGAAGAAGAGGAAGAGTGAATTATACAGGATCGTCTACAAGTCCATGTATAAGAATGGTAATGCATTTTATGTATTGCTCTCTACAACCTCAGACACTTAATGATAATTGATATGATTAGCCTTTTGTTTGACTACATTATCAAACAGCTAGTAATGTGTTCCTAATGTTACATAAACCATGTTCCCATTCTCCGTTCAGAGTCAGACAGCTGCCTTCTAACAATCAGCATCCTTAGAAACGCATCGAACATCATAGAAAGTCAGTGGAGAAAAGCCCCGCACACACGCTGACAAGATTGGTCACATGTTTTCACAGGTGTTTTTGAGAAGGTCTTTGGTTCACTGCAGATTTAAGGAGAAAAACGCAGCAATGGTGTTGTTGACTGATGAATTTGCACATGGTTTTTCTTAAAGCTTATTAAATCAGTGTGCTGATTCGCAGCTCATTCTCTCTCACCCACATACATCGTAAAATAGTTCAATATTCCATTAAAAATACAGTAATATACAGCTGTGGGAGTATAAGCAGAAAAAACGACTCATTTCCTCTGCCATCTCTCCTCTATTCTCTTTCAGATTGCTTCTGCTCCTGCCGCCACTGCTTTCTTCTCGCTCATTGATTTCCGCCTCCATCTTCTCTCTCTGTTCAACCCGTCTGAGATTTGTGTGTTTAGCTGTTTTGTATCACTTGACTTTACACGTTTGAGTTTTAAGGTTGAAAACGGATACATAAACGCTTGCGTTTTATGACCCTGAACATGGAATCAGTCAAGCGTAATTTTCAATTATCAGCAGGCCTACATGACACGACCACAGGCTCTGTTCCAAACCCGGGAAGCTGACTATCTAGACGGCATTTTGAGACTTGATATGAAGGCTGTTCCAAACAGTAGGTGGCAAATTTATTCTGCCTTTTGAGGTCAAATTCTAAGGCAGCACTGCATACTGTCCTCACAGACATGAGAAGCTTGCATTCTGTCTCCATCAGCGATACGATTTCATACCCAACAAACGCCATGTTCTCTCTAGGGTTTGAAATGGAGCTGTGAAGTGCTACTCGTTTGCAGACACTTCCAATGCAATAGTCTGGTGTGCTTGAATCTGATGTCCCTCTAATGAAGAGGCGTGTCAAAAAAGACTGGGGGGAATGAAAAGACTGTCTTCAGTTTTTGCATTTCGCATCTATTCATCTCTCTGACTCTCTTTCACTCCCTCTGTTCACTGCTCTTGTTTACAAACTTTGTTCTTCAAAGTATGCTAATGGACGATGTGACCCAGATCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGATCAGAGAGACATCTGGCCTGTGAAGATGAGGGTGTTTGCACTTATTATGTTGAAGTGGAGGCCAAAGCCACAACCCTCATATTCCTTAGAAATCAGTCACTGTATTCATTGGCTCTGAGAAATACTCAACATACGTCTCTCTGTAGATCAGTCGTAATTACAGTATTTGAGTTTCTTAGTCATTTACACTGTAAGAAAAAAAACAAACAGTTAAATTAATGGTTAAAAGCTGGTTGCCAGAACTTGCTGTACAAAATACTGTAGCCACATTTTAGGTCTTACAGATTTAACTTAAATTTACAGTAAAAGAGAAACTGCTACTTTTCAGGAAATGGAAAAAAACACTGTATTTTTAAATAATTAATCACTGTGTTGTTAAAGTTGATATTATGGATTTATATATGGTCAGACACTTGTGTTTGTATTATTTACCAAAATTAAACTCAAATGGAGTTACAGGGTTTTTGACCATCGTATTTCTGAGAATTTCAGACGTGTGTTTTGTCCATCATTAGAACAGCTGTATCTGAGGTAGTAAGTGCATCGCTTTACCTTTTCATCAACTTACGACTTAGAAAGTTTATTGTAGCTATGTGGGCATTCAGTTTTTTTCTGTCATTTGGCCAAAATATCATGTTATAAAAGACGAAATGCTTCACACAGGCTATTTAAGACAGTATTGGCTATGATTCAACGACAAATGCCTAGACTAAGACATTCTTCTCTGCTCCTCAAAGACATAAATCATTATCCTTTATATATATATATATATATNTATATATATAAATATATAAATCTAATATATAAATCTTTTATTATTGTTGTTGTTATTATTAAATGCATGTTTTTATTTGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU425031 lncRNA downstream 3503 568633 ~ 569082 (-) True G372142
TU425024 lncRNA downstream 55562 516732 ~ 517023 (-) True G372135
TU425110 lncRNA downstream 57587 514790 ~ 514998 (-) True G372212
TU425109 lncRNA downstream 58203 514154 ~ 514382 (-) True G372211
TU425018 lncRNA downstream 151328 420513 ~ 421257 (-) True G372129
TU425120 lncRNA upstream 63026 643105 ~ 643751 (-) True G372219
TU425154 lncRNA upstream 113617 693696 ~ 694083 (-) False G372247
TU425153 lncRNA upstream 113702 693781 ~ 694083 (-) True G372247
TU425158 lncRNA upstream 117734 697813 ~ 698029 (-) True G372251
TU425143 lncRNA upstream 127265 707344 ~ 708663 (-) True G372237
CI01000171_00530302_00562539.mRNA mRNA downstream 9340 528920 ~ 563245 (-) False CI01000171_00530302_00562539
CI01000171_00506482_00509615.mRNA mRNA downstream 62859 505755 ~ 509726 (-) True CI01000171_00506482_00509615
CI01000171_00435644_00442897.mRNA mRNA downstream 129541 435087 ~ 443044 (-) True CI01000171_00435644_00442897
CI01000171_00340448_00356867.mRNA mRNA downstream 215718 338756 ~ 356867 (-) True CI01000171_00340448_00356867
CI01000171_00299408_00304370.mRNA mRNA downstream 268173 298735 ~ 304412 (-) True CI01000171_00299408_00304370
CI01000171_00608319_00641115.mRNA mRNA upstream 27715 607794 ~ 641753 (-) True CI01000171_00608319_00641115
CI01000171_00650378_00659595.mRNA mRNA upstream 70232 650311 ~ 659595 (-) True CI01000171_00650378_00659595
CI01000171_00659729_00660264.mRNA mRNA upstream 79650 659729 ~ 660264 (-) True CI01000171_00659729_00660264
CI01000171_00663431_00666879.mRNA mRNA upstream 83352 663431 ~ 666879 (-) True CI01000171_00663431_00666879
CI01000171_00732682_00786057.mRNA mRNA upstream 152448 732527 ~ 786075 (-) False CI01000171_00732682_00786057
TU425003 other downstream 31266 518420 ~ 541319 (-) True G372115
TU425022 other downstream 101277 453246 ~ 471308 (-) True G372133
TU425014 other downstream 142703 383328 ~ 429882 (-) True G372125
TU425015 other downstream 275743 175553 ~ 296842 (-) True G372126
TU424987 other upstream 6698 586777 ~ 645374 (-) False G372104
TU424988 other upstream 7547 587626 ~ 645374 (-) True G372104
TU425131 other upstream 283200 863279 ~ 884846 (-) True G372229
TU425132 other upstream 283200 863279 ~ 884846 (-) False G372229
TU425130 other upstream 300667 884684 ~ 884846 (-) True G372229

Expression Profile