RNA id: TU425158


Basic Information

Item Value
RNA id TU425158
length 217
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G372251
representative True

Chromosome Information

Item Value
chromosome id CI01000171
NCBI id null
chromosome length 912836
location 697813 ~ 698029 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGCACTTTAAGCAAAACCTGATCAGTTTTGTTGTACAACATTAAAATCATTGGGGCTTTCATTTGTCTTGATGGCAAAACTTAAACAGATGTGCACAAGACATGAATAAAATGAAAAAAACGCACACAATTTTTTGTGTTCATGCAAAGCCAAAACTGGGGTAATCTGCAAAAATCTAGTTGTGTCCATCAGGATTTGCCTCAACGGTTCTCCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU425154 lncRNA downstream 3730 693696 ~ 694083 (-) False G372247
TU425153 lncRNA downstream 3730 693781 ~ 694083 (-) True G372247
TU425120 lncRNA downstream 54062 643105 ~ 643751 (-) True G372219
TU425025 lncRNA downstream 117734 572585 ~ 580079 (-) True G372136
TU425031 lncRNA downstream 128731 568633 ~ 569082 (-) True G372142
TU425143 lncRNA upstream 9315 707344 ~ 708663 (-) True G372237
TU425165 lncRNA upstream 14762 712791 ~ 713106 (-) True G372257
TU425167 lncRNA upstream 21758 719787 ~ 720078 (-) True G372259
TU425150 lncRNA upstream 42285 740314 ~ 745447 (-) True G372244
TU425182 lncRNA upstream 132680 830709 ~ 833270 (-) True G372274
CI01000171_00663431_00666879.mRNA mRNA downstream 30934 663431 ~ 666879 (-) True CI01000171_00663431_00666879
CI01000171_00659729_00660264.mRNA mRNA downstream 37549 659729 ~ 660264 (-) True CI01000171_00659729_00660264
CI01000171_00650378_00659595.mRNA mRNA downstream 38218 650311 ~ 659595 (-) True CI01000171_00650378_00659595
CI01000171_00608319_00641115.mRNA mRNA downstream 56060 607794 ~ 641753 (-) True CI01000171_00608319_00641115
CI01000171_00530302_00562539.mRNA mRNA downstream 134568 528920 ~ 563245 (-) False CI01000171_00530302_00562539
CI01000171_00732682_00786057.mRNA mRNA upstream 34498 732527 ~ 786075 (-) False CI01000171_00732682_00786057
CI01000171_00788022_00797188.mRNA mRNA upstream 89717 787746 ~ 797188 (-) True CI01000171_00788022_00797188
CI01000171_00824754_00842657.mRNA mRNA upstream 126618 824647 ~ 842918 (-) True CI01000171_00824754_00842657
CI01000171_00871295_00874260.mRNA mRNA upstream 173024 871053 ~ 874312 (-) True CI01000171_00871295_00874260
CI01000171_00881122_00881454.mRNA mRNA upstream 182784 880813 ~ 881454 (-) False CI01000171_00881122_00881454
TU424987 other downstream 52439 586777 ~ 645374 (-) False G372104
TU424988 other downstream 52439 587626 ~ 645374 (-) True G372104
TU425003 other downstream 156494 518420 ~ 541319 (-) True G372115
TU425022 other downstream 226505 453246 ~ 471308 (-) True G372133
TU425014 other downstream 267931 383328 ~ 429882 (-) True G372125
TU425131 other upstream 165250 863279 ~ 884846 (-) True G372229
TU425132 other upstream 165250 863279 ~ 884846 (-) False G372229
TU425130 other upstream 182717 884684 ~ 884846 (-) True G372229

Expression Profile