RNA id: CI01000189_03494191_03495519.mRNA


Basic Information

Item Value
RNA id CI01000189_03494191_03495519.mRNA
length 1122
RNA type mRNA
GC content 0.38
exon number 5
gene id CI01000189_03494191_03495519
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 3493646 ~ 3495519 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCTGAAATCTTGTATGTTATGAATCCCTGGGACCCCATTACTTACACAGTGACACCTGCTGCTAAGATTTTAGCAAGATGTGTAACATCAGGCACCATGACACAGACTAATTTAGATTTAGAGCTGCTGAGGCTGGAAAGAGACGGTGCAGACGTCACTCACAGTCATTACCTCAGTCAAAGGTTTGCTTCCTTGCAACAGTTTACTTCCCACCTTCAGGAAGTGTTGCGAGAACAGACAGTCCTGCGAGAGAGACTTACAAAGCCACTGTGTCAGCAGAACCTGCCCATTCCGGCTGATCTTCACAGATATGTGGTAGAGCTCATGGGGATGGTGGTGGAGTTTATTCAGAACTTGGAAGTGAAAATTAAGATGGTTCGAGCAATTCCAAACACTGAAAGTTATCTGAGTAATCTGAACAATGGCAGAACTCAACTGCTCGCTCAGGTCACTGAGGTCGAGAACCTGTACAAGCAAGTTCTTAAGCGACGAGGACATTCACAGACACGTCTATTTGATAAAGATTTTCAGAATGAAAATCGCTCACTGTTTGTTCAGGATACTAGTGGACAGTAAAATGATAAAATGAACTAATTACAAAATCATTGACTAGATTTAGTATACATTTTTACATTTGTATTTTCTGTATACATCTAACTATAAGCTTTCATATTTTGTTTAATATTGTCTGTATTCCGTGTACCTAGTGGTTGGTGACAAGGAACTTCGATACATTAGAGAGAACAGATTTATGGAGTATATTCTGCGGCAGTATGTAAATTTTCAGGCACGTTTCATTTTTTGTAAGATTTTCTTTTATAATAATAATAAATAAATGTTCCACATTTCAGACCAAAACCGGAGGGTTTCATTGCTGGTAACCAGCATCATGTATTATATTATTTGTGTGCTACATATACTCTTCCTTTTTTTTTTCTATCAGTGTAAAATTAGTGAACTGCTGGATACCTGATCCATCAAAGCATTTCTGGACATTTGTAGTGGCTTGCTTAGACATCAGTGACTGCAATGGATGATTTGTAAGTGGAACAACTCAAAAGATTTGATTTAGTGTTCAGGCTTTTTAATATTTTATATAATAGGACAAATGAAACAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436661 lncRNA downstream 3016 3490418 ~ 3490630 (-) True G381961
TU436651 lncRNA downstream 19209 3474224 ~ 3474437 (-) True G381951
TU436545 lncRNA downstream 127514 3365314 ~ 3366132 (-) True G381855
TU436631 lncRNA downstream 133405 3359839 ~ 3360241 (-) True G381931
TU436614 lncRNA downstream 229410 3263754 ~ 3264236 (-) True G381918
TU436557 lncRNA upstream 7099 3502618 ~ 3503965 (-) True G381867
TU436705 lncRNA upstream 125355 3620874 ~ 3621089 (-) True G381998
TU436711 lncRNA upstream 143210 3638729 ~ 3687279 (-) True G382003
TU436680 lncRNA upstream 201367 3696886 ~ 3697697 (-) True G381978
TU436752 lncRNA upstream 216708 3712227 ~ 3712452 (-) True G382036
CI01000189_03455342_03475831.mRNA mRNA downstream 17815 3455231 ~ 3475831 (-) True CI01000189_03455342_03475831
CI01000189_03367583_03403144.mRNA mRNA downstream 90502 3366785 ~ 3403144 (-) True CI01000189_03367583_03403144
CI01000189_03335757_03343285.mRNA mRNA downstream 150361 3335373 ~ 3343285 (-) True CI01000189_03335757_03343285
CI01000189_03294767_03307517.mRNA mRNA downstream 185791 3294349 ~ 3307855 (-) True CI01000189_03294767_03307517
CI01000189_03259755_03261745.mRNA mRNA downstream 231901 3259357 ~ 3261745 (-) True CI01000189_03259755_03261745
CI01000189_03506782_03513494.mRNA mRNA upstream 11263 3506782 ~ 3513494 (-) True CI01000189_03506782_03513494
CI01000189_03517928_03524647.mRNA mRNA upstream 21764 3517283 ~ 3524712 (-) True CI01000189_03517928_03524647
CI01000189_03546199_03556875.mRNA mRNA upstream 50680 3546199 ~ 3556875 (-) True CI01000189_03546199_03556875
CI01000189_03557950_03558676.mRNA mRNA upstream 62289 3557808 ~ 3558676 (-) True CI01000189_03557950_03558676
CI01000189_03608917_03613975.mRNA mRNA upstream 112716 3608235 ~ 3613975 (-) True CI01000189_03608917_03613975
TU435927 other downstream 487202 2998873 ~ 3006444 (-) True G381317
TU435899 other downstream 530192 2959108 ~ 2961667 (-) True G381299
TU434639 other downstream 2595206 894220 ~ 898440 (-) True G380177
TU434342 other downstream 2728269 753257 ~ 764109 (-) True G379912
TU436781 other upstream 335108 3830627 ~ 3832613 (-) True G382060
TU436773 other upstream 390043 3885562 ~ 3892909 (-) True G382052
TU436879 other upstream 650071 4145590 ~ 4146084 (-) True G382153

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024062 False 977 mRNA 0.41 7 NC_007128.7 31606635 ~ 31611692 (-)