RNA id: CI01000189_04058639_04097730.mRNA


Basic Information

Item Value
RNA id CI01000189_04058639_04097730.mRNA
length 3362
RNA type mRNA
GC content 0.51
exon number 23
gene id CI01000189_04058639_04097730
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 4057926 ~ 4097730 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCCCGGAAGAGTAATCCGGTTCATGTTTTTTATGGTCCTGTCCAGGTCTTTGATGTTTCTGTGCTCCGGCTTCGGTCGTGTTTTGGTCAGGAGATGATCTCGGGGAACTTCTGCTGGGGGAGGCCAAACTCCAGCAGTACCTCAAAGAAAACCCCATCAAGCAGGGAGCCACCTGAATACATGCAGGAGGCCAGTCTGATCATGGCTAAGCTATGCTATGTGGAGGGTGATTACAGGGAAGCGCTGAATCAGTATGCCCGTGTGAATCTGGATGAGATGCAGCTGCCTGTCCTGAGGCGTCAGATTTACTGCGGCCGTTATGCAGGTCTTTGTCTGGAGAAAGTGCCCATGGCGTCCCCATCACTGTCCAATCGTAATGCAGACAGAGACCAGGAGATCATCACTTGCTATGAGAAGTCTGGAGACATTGCCCTGCTCTATCTTCAAGAGGTAGAAAAGGCTCTTAGTGCAGGAATTCAGAACCGCAGTCCAAAGCCTGGCCCGGTCACACAGGAACAGGAACTTGGCTACTTCCTAGAGACTGGACTTCAGAGGGCTCATGTTATTCATTTCAAAAATGGTAACCTGACCCGTGGTGTCGGCCGCTTCCGAGAGATTCTCCGAGCCGTTGAGACCAGAACCACTCAGAACCTACGTATGACTATTGCCAGGCAGCTTGCAGAGATCCTTCTGAGGGGCATGTGTGAACAGAGTTACTGGAACCCACTGGAAGACCCCCCCCACCATTCCCCACTGGATGATCCTCTCAGACACACCCCGCACACAAAGGACTACGCCCTCAGCCGCCGCCCACGCATCTACTCAGGAGAGAATTTGTTTTGTCCGCAGGAGAACACAGAGGAGGCCTTACTTCTGTTGTTAATCAGTGAGTCCATGGCTAACAGAGACGCCGTATTGAGTCGAATCCCTGAACACAATAATGACCGAATCATCAGCCTCCAGAGCGCCTCACTGGTGTACGACCTGCTGACCATCGCGCTTGGCCGACGCGGACAGTATGAGATGCTCTCAGAGTGTCTCGAAAGAGCCATGAAGTTTGCCTTTGAGGAGTTTCATCTCTGGTTCCAGCTCGCTCTCTCCCTCATGGCTGCTGGGAAGTCTGCTCGAGCAGTAAAAGTGCTGAAGGAGTGTATGAGACTGAAGCCGGATGATCCCACCATCCCTCTGCTGGCCGTCAAGCTGTGTATTGGAAACCTGCACTGGCTGGAAGAAGGTGAGCGCTTCGCTAAAATAGTGATTGATATGGGTGAGAAGGCGGCTGAATTCAGGGCCAAAGGCTATCTAGCAATTGGTCTTGTCTACAGTCTGAAAGCCACAGATGCATCTCTTCGAGGAATGCAGGAAGAGTATCAGAAAAAAGCACTGAGTGCTTTCCAGAGGGCACAGAGTCTGTCCCCCACTGATCATCTGGCTGTTTTCTACCTGGCACTGCAGCTGGCTGTATCTCGACAGATTCCAGAAGCTCTCGGTTATGTACGCCAGGCGTTACAGCTGCAGGGCGATGATGTTCATTCACTGCACCTGCTGGCCTTGCTGCTGTCAGCTCAGAAACACTACCACGATGCTCTCAACATCATCGAGATGGCCCTCAGCGAATACCCTGAGAACTTCATCTCTTTGAATTGGCTGAACTCAGATCAGCGTGGCCTTCAGAGACCGCAGAGCATGTTTAAAGCTCAAACTGATCTCAGTTCGGGCTGCAGCAACAACGAGCTGTTGAAGAGCAGCCTCAATAAATGGTATCTGCTTCACACACACACCAGCTGGATCTCCTCACACGCTGCCATATCTGATTATAGAAATGCCCATCTGCACTCTCAGTGTCTTTTATTCACAAAGGTGAAGTTGGAGACATTGTGTCGAGGACCAGAGGAGGCATTACTCTCCTGCAAACGCATGCTGCAGATTTGGAAATCCTGTTACAACCTCACCAACCCCAGATGCTTTCCTTTTCTGGCCCTGTTTACATTTTATCTGTTTTGGGTGATCCAGTCAGACAAATGTAATTTGCTGTTTACATCTGCATGTGGCTTCATGGTCACGCTCTTTCTGCAGCCTGGTTCCGTCCATGCCACCTCTATAGCAGCGTCACGGGTGGAACAGGCGCTGTCTGAGGTGGCCTCCTCCCTCCAGAGCAGTGCTCCAAAACAGGGACCCCTCCACCCTTGGATGACCCTCGCCCAGATCTGGCTGCATGCAGCGGAGGTGTATATTGGAATGGGAAAGGCGGCGGAGGCGACAGCGTGTACGCAGGAAGCAGCCAACCTGTTCCCCATGTCCCATAACGTGTTGTTTATGAAGGGTCAGGTGGCAGAGCTGCGGGGGAATGTGGACGAGGCCAAACGCTGGTACGAGGAGGCGCTGTCCATCAGCCCCACCCACGTCAAGACCATGCAGAGACTGGGTCTGATATTGCATCAGCTACAGAGGTACAGTCTTGCGGAGAAGATCTTGCGTGATGCGGTGCAGGTGAACAGCACAGCACATGACGTGTGGAACAGTCTGGGAGAGGTGCTGCAAGCCCAAGGCAATGACGCCGCTGCGACCGAATGCTTCCTTACTGCCCTGGAACTGGAGGCCAGCTGCCCCATCTTACCTTTCACCATCATTCCCCGCACCCTCTAAGACACTCCGCGTGCTCACCACCAACAAAAACCTCTGTCCGAGAGTCGTGCATGAACCACAGCCCTCAATCACACACAAACGCCCAACCTGAAACTTCTCTTCTATCCTGGAATGCCTTTCCCACCCCTCTAAACTTTTTATCTGTTCTCAGATGTGGATCTGCAGAAAAAGAACTCCAATTGACACAGTTGTCAGTGTGAACTTTTCTAGACTGCTTCACACTCTTGGCTTTTTTCTCCTCCCCTCTTTCTTCCTTCTTTCTCTGCTAGAATGTCCTCCTGCTTCTGTACATCGTAGTGGTGCCGCCCATCTTAAAACCCCACTCCCTTCAGCACTCTCTTTGGTCAGTTTCACTCCACTGTATGACTGGACCAAAGAGAAACCTGTACAAGCTGTTGTCACAGTGAAGCGGGTGATTGATGCAGCGGTTTCATCAAACCACAGTGCTTCCTTTTTGCCCCGAAACATGTCCAGAAACATACAATCTCGAGATTCTAGTAGCTGTGTGTCATACGAACCAGTAATAACACTGATGCAGAGACGGTCAAAAGTGTCTATATGTGTGCTGTGTGTTTGTGCAGAGTTAAAATGACGGTCAGAGTGTGTGTGTCCTTTATATGTGTTATTATCCAGAATATGTGGCGTGTGCGTGTGTTTATTTTGAATGGAATACGACGTTACAGTGGATCCCTGTTACACACATGCGTAATAAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436863 lncRNA downstream 4434 4053269 ~ 4053492 (-) True G382137
TU436862 lncRNA downstream 8373 4049313 ~ 4049553 (-) True G382136
TU436861 lncRNA downstream 8698 4048885 ~ 4049228 (-) True G382135
TU436860 lncRNA downstream 9559 4047949 ~ 4048367 (-) True G382134
TU436859 lncRNA downstream 10363 4047263 ~ 4047563 (-) True G382133
TU436894 lncRNA upstream 74789 4172519 ~ 4178416 (-) True G382166
TU436952 lncRNA upstream 244378 4342108 ~ 4346215 (-) True G382201
TU436944 lncRNA upstream 437828 4535558 ~ 4540944 (-) False G382198
TU436942 lncRNA upstream 443458 4541188 ~ 4567288 (-) False G382198
TU436943 lncRNA upstream 443458 4541188 ~ 4567288 (-) True G382198
CI01000189_04017195_04030340.mRNA mRNA downstream 27586 4017021 ~ 4030340 (-) True CI01000189_04017195_04030340
CI01000189_03983572_04013988.mRNA mRNA downstream 43793 3982366 ~ 4014133 (-) True CI01000189_03983572_04013988
CI01000189_03980640_03981210.mRNA mRNA downstream 76716 3980613 ~ 3981210 (-) True CI01000189_03980640_03981210
CI01000189_03950993_03958722.mRNA mRNA downstream 99204 3950173 ~ 3958722 (-) True CI01000189_03950993_03958722
CI01000189_03903426_03904603.mRNA mRNA downstream 153323 3902934 ~ 3904603 (-) True CI01000189_03903426_03904603
CI01000189_04120947_04130707.mRNA mRNA upstream 22607 4120337 ~ 4130707 (-) True CI01000189_04120947_04130707
CI01000189_04271632_04393877.mRNA mRNA upstream 173902 4271632 ~ 4393877 (-) True CI01000189_04271632_04393877
CI01000189_04432088_04472364.mRNA mRNA upstream 334204 4431934 ~ 4472706 (-) True CI01000189_04432088_04472364
CI01000189_04572894_04573508.mRNA mRNA upstream 475129 4572859 ~ 4573653 (-) True CI01000189_04572894_04573508
CI01000189_04633635_04652408.mRNA mRNA upstream 535905 4633635 ~ 4654286 (-) True CI01000189_04633635_04652408
TU436773 other downstream 165017 3885562 ~ 3892909 (-) True G382052
TU436781 other downstream 225313 3830627 ~ 3832613 (-) True G382060
TU435927 other downstream 1051482 2998873 ~ 3006444 (-) True G381317
TU435899 other downstream 1094472 2959108 ~ 2961667 (-) True G381299
TU434639 other downstream 3159486 894220 ~ 898440 (-) True G380177
TU436879 other upstream 47860 4145590 ~ 4146084 (-) True G382153

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022876 False 3697 mRNA 0.51 20 NC_007128.7 26611977 ~ 26690813 (+)