Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU433965 |
| length | 3087 |
| RNA type | TUCP |
| GC content | 0.40 |
| exon number | 4 |
| gene id | G379600 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000189 |
| NCBI id | null |
| chromosome length | 4726117 |
| location | 475615 ~ 496908 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU433962 | lncRNA | upstream | 1591 | 473810 ~ 474024 (+) | True | G379599 |
| TU433955 | lncRNA | upstream | 15184 | 459307 ~ 460431 (+) | True | G379592 |
| TU433911 | lncRNA | upstream | 59567 | 415750 ~ 416048 (+) | True | G379561 |
| TU433910 | lncRNA | upstream | 61124 | 414240 ~ 414491 (+) | True | G379560 |
| TU433908 | lncRNA | upstream | 66854 | 408557 ~ 408761 (+) | True | G379558 |
| TU433993 | lncRNA | downstream | 81477 | 578385 ~ 579319 (+) | True | G379627 |
| TU433945 | lncRNA | downstream | 119684 | 616592 ~ 617478 (+) | True | G379582 |
| TU433926 | lncRNA | downstream | 263638 | 760546 ~ 764103 (+) | True | G379570 |
| TU434075 | lncRNA | downstream | 298281 | 795189 ~ 795509 (+) | True | G379695 |
| TU434086 | lncRNA | downstream | 345479 | 842387 ~ 852067 (+) | True | G379700 |
| CI01000189_00448469_00457564.mRNA | mRNA | upstream | 17430 | 448469 ~ 458185 (+) | True | CI01000189_00448469_00457564 |
| CI01000189_00438982_00445216.mRNA | mRNA | upstream | 29970 | 438982 ~ 445645 (+) | True | CI01000189_00438982_00445216 |
| CI01000189_00322834_00332685.mRNA | mRNA | upstream | 142865 | 322834 ~ 332750 (+) | True | CI01000189_00322834_00332685 |
| CI01000189_00297654_00300990.mRNA | mRNA | upstream | 174157 | 297654 ~ 301458 (+) | True | CI01000189_00297654_00300990 |
| CI01000189_00183881_00277704.mRNA | mRNA | upstream | 197911 | 183881 ~ 277704 (+) | True | CI01000189_00183881_00277704 |
| CI01000189_00537167_00546397.mRNA | mRNA | downstream | 40259 | 537167 ~ 547307 (+) | True | CI01000189_00537167_00546397 |
| CI01000189_00552262_00553370.mRNA | mRNA | downstream | 53925 | 550833 ~ 553486 (+) | True | CI01000189_00552262_00553370 |
| CI01000189_00613239_00646678.mRNA | mRNA | downstream | 114691 | 611599 ~ 646948 (+) | True | CI01000189_00613239_00646678 |
| CI01000189_00671005_00685458.mRNA | mRNA | downstream | 174097 | 671005 ~ 686271 (+) | True | CI01000189_00671005_00685458 |
| CI01000189_00693840_00694391.mRNA | mRNA | downstream | 196793 | 693701 ~ 695967 (+) | True | CI01000189_00693840_00694391 |
| TU434221 | other | downstream | 515638 | 1012546 ~ 1012903 (+) | False | G379799 |
| TU434222 | other | downstream | 515638 | 1012546 ~ 1012834 (+) | True | G379799 |
| TU434037 | other | downstream | 519123 | 1016031 ~ 1059385 (+) | True | CI01000189_00987665_01058757 |
| TU435687 | other | downstream | 2342313 | 2839221 ~ 2841125 (+) | True | G381120 |
| TU436136 | other | downstream | 3128828 | 3625736 ~ 3626855 (+) | True | G381491 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00023946 | True | 1757 | mRNA | 0.45 | 4 | NC_007128.7 | 26881214 ~ 26911852 (-) |
