RNA id: TU434706


Basic Information

Item Value
RNA id TU434706
length 755
lncRNA type intronic
GC content 0.39
exon number 2
gene id G380242
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 1082461 ~ 1083619 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAAATATGTGCTCTTCAGGGCTTTACAGCAGTTTCAAAATAAAAGCCAGTTCGATAAAATTGCAAATAATGGCAAATATATCACCCATGATAACATATTGATCGACCAATACAAAATAGTAAGGCTGGGACAACAAATCGTTGAATCACAAATTGAGAAATTATTCTAGATTGATTGAGATTTTCCGAATGCATGTAGTTGAGAATAAACATGCAAGAAGTGTAAACAGTAGGAAACCTTATTGCAGGAAAACACAGATTTCAACAAAATTGGCAACAACTACAACCAACCTACCAAATTACAACAACTTAACTCCAAGAACTGCAAGTAAACCTCGGCCAGCAGGCGGACCGAGACGCTTCAATATCTCTCTCTCTCTCTCTCTCGCTCACACAAAAGCAGAGCAGATGTTTCTGGAATTAAACAGGTTGTACTAGTGAGATAAGAAAAACTGATTATACCATTTACAAATTTACAGATAATTCACTCCATTTGCCATATGACTTGTTGACTGTACTCCATCTGTGCACACACACAAACCAACACATGCATAATCACACAACAACAACACTTCAGCAGGATGTGGATCGGAGGAATAACAGGAAGTAAACGGAGGATTCTGAACTTGTGCAGAAAGGAAAAGCCATCAATGTTTCCACAGACCATCAGTGTGCAAGACTTCCTGAGAGCATGTGACTGCTCAGAAAAGAGGATCCTGTGACATTGGTATTAGATACATGAACCATCTCAGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU434701 lncRNA downstream 16874 1065241 ~ 1065587 (-) True G380237
TU434666 lncRNA downstream 106398 975838 ~ 976063 (-) True G380202
TU434649 lncRNA downstream 150765 931450 ~ 931696 (-) True G380185
TU434637 lncRNA downstream 183944 894220 ~ 898517 (-) False G380177
TU434633 lncRNA downstream 184021 894220 ~ 898440 (-) False G380177
TU434731 lncRNA upstream 66275 1149894 ~ 1150228 (-) True G380266
TU434732 lncRNA upstream 67004 1150623 ~ 1150992 (-) True G380267
TU434735 lncRNA upstream 76075 1159694 ~ 1159954 (-) True G380270
TU434741 lncRNA upstream 90745 1174364 ~ 1174616 (-) True G380276
TU434742 lncRNA upstream 93593 1177212 ~ 1177466 (-) True G380277
CI01000189_00859327_00862617.mRNA mRNA downstream 219844 858786 ~ 862617 (-) True CI01000189_00859327_00862617
CI01000189_00831218_00832634.mRNA mRNA downstream 247375 831001 ~ 835086 (-) True CI01000189_00831218_00832634
CI01000189_00797964_00824109.mRNA mRNA downstream 258352 796650 ~ 824109 (-) True CI01000189_00797964_00824109
CI01000189_00764790_00765233.mRNA mRNA downstream 316685 764674 ~ 765776 (-) False CI01000189_00764790_00765233
CI01000189_00744231_00759517.mRNA mRNA downstream 322944 744103 ~ 759517 (-) True CI01000189_00744231_00759517
CI01000189_01256704_01259709.mRNA mRNA upstream 173037 1256656 ~ 1259895 (-) True CI01000189_01256704_01259709
CI01000189_01289557_01297885.mRNA mRNA upstream 205651 1289270 ~ 1297912 (-) True CI01000189_01289557_01297885
CI01000189_01321624_01323067.mRNA mRNA upstream 237828 1321447 ~ 1323388 (-) True CI01000189_01321624_01323067
CI01000189_01342802_01344801.mRNA mRNA upstream 259173 1342792 ~ 1344801 (-) True CI01000189_01342802_01344801
CI01000189_01391124_01392266.mRNA mRNA upstream 307023 1390642 ~ 1393944 (-) True CI01000189_01391124_01392266
TU434639 other downstream 184021 894220 ~ 898440 (-) True G380177
TU434342 other downstream 317084 753257 ~ 764109 (-) True G379912
TU435899 other upstream 1875489 2959108 ~ 2961667 (-) True G381299
TU435927 other upstream 1915254 2998873 ~ 3006444 (-) True G381317
TU436781 other upstream 2747008 3830627 ~ 3832613 (-) True G382060
TU436773 other upstream 2801943 3885562 ~ 3892909 (-) True G382052
TU436879 other upstream 3061971 4145590 ~ 4146084 (-) True G382153

Expression Profile