RNA id: TU436288


Basic Information

Item Value
RNA id TU436288
length 199
lncRNA type antisense_over
GC content 0.50
exon number 2
gene id G381632
representative True

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 4030319 ~ 4031306 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGAAGGACGGAAAAAGAGCCATGTTGCTTCATTCAGATCAAAACAGACGCTCGCCGATTGCGTCATCCGTCTGCGACCTTTTTTGATGTAAAGAAGGCTCACGGTGAGTCTATAATATGAGATCTGACCCCGGGAGAGAAATTTAAGCAGCCCTGTCTTGTCTAAACGAAGGGCTTGTTGGCCCGCCGGTTCCAGTGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436239 lncRNA upstream 90191 3933546 ~ 3940128 (+) True G381588
TU436223 lncRNA upstream 146544 3883529 ~ 3883775 (+) True G381576
TU436206 lncRNA upstream 179977 3848953 ~ 3850342 (+) True G381559
TU436207 lncRNA upstream 247346 3757939 ~ 3782973 (+) True G381560
TU436203 lncRNA upstream 278364 3746800 ~ 3751955 (+) True G381556
TU436278 lncRNA downstream 14725 4046031 ~ 4047164 (+) True G381622
TU436289 lncRNA downstream 19478 4050784 ~ 4051094 (+) True CI01000189_04049709_04050966
TU436290 lncRNA downstream 20793 4052099 ~ 4052323 (+) True G381634
TU436292 lncRNA downstream 25072 4056378 ~ 4056863 (+) True G381636
TU436283 lncRNA downstream 54322 4085628 ~ 4088190 (+) True G381627
CI01000189_03967133_03967547.mRNA mRNA upstream 62645 3966981 ~ 3967674 (+) True CI01000189_03967133_03967547
CI01000189_03884911_03893327.mRNA mRNA upstream 135740 3884911 ~ 3894579 (+) True CI01000189_03884911_03893327
CI01000189_03865371_03880187.mRNA mRNA upstream 150018 3864646 ~ 3880301 (+) True CI01000189_03865371_03880187
CI01000189_03794645_03856786.mRNA mRNA upstream 173443 3794645 ~ 3856876 (+) True CI01000189_03794645_03856786
CI01000189_03789640_03792201.mRNA mRNA upstream 238118 3789640 ~ 3792201 (+) True CI01000189_03789640_03792201
CI01000189_04038185_04043995.mRNA mRNA downstream 6879 4038185 ~ 4044594 (+) True CI01000189_04038185_04043995
CI01000189_04049709_04050966.mRNA mRNA downstream 18403 4049709 ~ 4051699 (+) False CI01000189_04049709_04050966
CI01000189_04099205_04099517.mRNA mRNA downstream 67899 4099205 ~ 4099724 (+) True CI01000189_04099205_04099517
CI01000189_04103153_04114542.mRNA mRNA downstream 71847 4103153 ~ 4115337 (+) True CI01000189_04103153_04114542
CI01000189_04170533_04184962.mRNA mRNA downstream 139227 4170533 ~ 4185273 (+) True CI01000189_04170533_04184962
TU436136 other upstream 403464 3625736 ~ 3626855 (+) True G381491
TU435687 other upstream 1189194 2839221 ~ 2841125 (+) True G381120
TU434037 other upstream 2970934 1016031 ~ 1059385 (+) True CI01000189_00987665_01058757
TU434221 other upstream 3017416 1012546 ~ 1012903 (+) False G379799
TU436323 other downstream 89081 4120387 ~ 4122344 (+) True G381655

Expression Profile