CI01000189_04170533_04184962 (CCSER2A)


Basic Information

Item Value
gene id CI01000189_04170533_04184962
gene name CCSER2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 4170533 ~ 4185273 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000189_04170533_04184962.mRNA
GTGTCTCTTTCGTGTTCATCCATGACTGCTGTTTGCTGATGGAACAGAAGGTCCTCAGTAAGTCCTCCATGGTTTCCAGACTGCCTAAATTTGGTGCCCGTCCTGTCAATGGTACCAGCTCACCCCTTCCCAATGGTACCCAGACTGTGCTCACCCAAGACAGCAAAAATCCTCCTGCTAGGCCAAACGGAGTGGTCAGAGCCTCCTCCTTTTCCATGAAATGGAGGAAGGACAGTGGTGGGTCAGTGGACCCTTCAAGCCCATTCGAGGGCGGTATACCAGAGGAGAAGAAAGAAGTTCACTCCCAACATTCTCCAGGAAGTAGGGAGTTAAAAAGCCCTTCTACTTCTGCTACTAAAGTGCGCAGGTCTGCCTCCTCATTGTCCACCGGAAGCCCCAAACCTGTAGCCAAATCCCCTAAATCCATCCCAAGTCCTAAACCAAAGCCCCAAAACACTCAGATCGTGACGACTTCCAAAAGTCAGGACATATCCCAAAAAAGTTCAAGCTCCAAGCCAACTCAAAATGGAACGTCATCTTTGGGGTCTTCACCAGGCCAAGCAGCCTTTTTGGGGCTCCAGCGACCAAGGGCAAACTCTAGCTCTACTCGAAGCACCTCTAAAGACAGCTTGTCCCAGTCCAACGACAGCCTCTCAAGACAGTCGGTCGTGCCTGACTACATGGTGCGTTCTCAGAGCTTCACCCACTTCAAGCAACTGCCCTCACCAACGTCCTCACCCATGACTCGATCCTTTTCTTTCAACAAGGCCGTGGAGCTAGCCAAACCACTAGCTAATACCCAGCTGCGTCCTCCACGAACACTTGGACTCAAATCTCCCCTGACCCTCAGCAAGGGCCGGCTAGTGCTTGGTTTGGGGGGCCTGGGGTTTGGAAAGGGGTCAACAGATAGATTACCTGCTGGGACTCCATCTTCAGAGAGCTTAACGCCTCCTAATTCCATAAAAAGGCCACTTCTTCTTAATTCAGTGCTGACAAAGCACTCGTTACAGGCCTATAGGCTAAATCGACCAACTGCTGCCAAACCGCAGTGCCCTCTAGTGGTTGGGAGGAGCCCTGTGGAGAGTGACGGTATAACCCCGCCTCTCACTCCAGAGCTGCCCCACTGTGCCACAAAGAGTACATCAGCTTCCATAGATTCCCCAGGGGAGCCTGTGACAGAGCTGGGGTCGGATGGGAACCTCCGCTACACTGGGGATGGAACAGAGGACATGTCTCTCTCCTCTGCATCTTCTCTTGAGAGAAATGACACCAGTGAGGAGTTCCTAGATGACTTTGATAACCTAGGGGACCAATCACAGAATGGCATCCTGCATAACAAAAATCCTTTGGCCACACCCACCCAGATGCGCATGCAGAGCTTCTTGAATGAGACCATGGACTGGACTGGGATTGGGCTGGCAGGTGGCAAGGCAGATTTAAGGGGTGGTGTGCTCCGTGGGCCGCCGCTTATGTCCCCTGACGTGGATCGTCATGCGGCCTCCTCTCTGGAGCTCTCCCCCTCTAACAGCTCTGGAGGAACATACATGTGGGATGAGGAGGGCATGGAGCCACTGGGACAAAACACACACATACACCGTTGCAGCAGTTATGAGTCAGAACTCAACAGCATAGACATTCTGAACAACTTGGATAACACTGGCTCATGTGACCTGGAAGATGATGACCTAATGCTTGATGTTGATCTGCCAGAGGACGGGGCCTTACACAATGGCGGTGTGAGTGCTGTGTATCGAAACTCTAAGACCTCTGAATTTGGAAGGACCCCGCTCAACCTCCCAAAGAAAGGCGACCTTCTCTTTCCAAGAAGTGTCTGTTTGTTTCTGAGCGTGTCTATGAGTGTTACCAAGTACTTAATGTGTAATAGTGTGTTTAAAAATGGGATGGCCCACTTCGAGCGCTCTGACAGGGGGGGCCGGCCGGCTCAATGGAGGAGGAGACAGCAAAGATGGAGTGGAATGGATCATGCTCATAATGACAATAGGCTAGCCGGGTTTCATTACGATGCCTGTCGTACAGGCCATCGGCCTCTCCATCCCACAGTTCAGCATGACAGTCACACGGTGGTGCTAGATGACCTCACTCTCAAACACGTGGCGGAAGACTGCTCGTCTGTCAAATCACAGCTGCTCAAACTCAAGAGTCTGCTGCAGATGGATGATGGTGAGATTACTCCAGAGGGTTTGGATTCCAGCGAAGATGACAGCAGAGCCAAGCAGATGGAGGAACTGATGAAGGAGGTGGCGCATCTCAGGGAAGAGCTGAAAAATAAAGATAAAATCATCACACGGCTCACTCATCAACAGCATCAAGAATCTGTGAGCCATCAACATTCCTGACACCTTCACGCTCACGCTCATTTTGAACATTTTATATTGATTGAATATACATAATACATGAGTGGCCAATCAGAGCCTGCAGCGTCTGCTGGAAGATACTGTACTAAAGCCATGCAGTCTGCGTGAATGAGATGAAATCAGGACAGGATGTTCTCAGAACAAACCCACATCTCATACTGTTCATTAACTTCACCACTCCAAGCAAAAAAACAAAACAAAAAACACACAGATAATGCCGCATCAACACATGCACTTTAACCTTTAATCCCAATTACTGTCACCTTTGCTGAGCAATTATATCATTAGCACTA

Function

symbol description
ccser2a Orthologous to human CCSER2 (coiled-coil serine rich protein 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000189_04170533_04184962.mRNA True 2668 mRNA 0.50 9 4170533 4185273

Neighbor

gene id symbol gene type direction distance location
CI01000189_04103153_04114542 FAM149B1 coding upstream 55196 4103153 ~ 4115337 (+)
CI01000189_04099205_04099517 MRPL57 coding upstream 70809 4099205 ~ 4099724 (+)
CI01000189_04049709_04050966 NA coding upstream 118834 4049709 ~ 4051699 (+)
CI01000189_04038185_04043995 CALML6, CALM2, CALM3, CALM1 coding upstream 125939 4038185 ~ 4044594 (+)
CI01000189_03967133_03967547 NA coding upstream 202859 3966981 ~ 3967674 (+)
CI01000189_04576234_04577598 NA coding downstream 390883 4576156 ~ 4578035 (+)
CI01000189_04674916_04701633 HHAT coding downstream 489643 4674916 ~ 4701679 (+)
G381627 NA non-coding upstream 82343 4085628 ~ 4088190 (+)
G381636 NA non-coding upstream 113670 4056378 ~ 4056863 (+)
G381634 NA non-coding upstream 118210 4052099 ~ 4052323 (+)
G381622 NA non-coding upstream 123369 4046031 ~ 4047164 (+)
G381681 NA non-coding downstream 84070 4269343 ~ 4269575 (+)
G381682 NA non-coding downstream 84745 4270018 ~ 4270288 (+)
G381756 NA non-coding downstream 328210 4513483 ~ 4514076 (+)
G381705 NA non-coding downstream 393226 4578499 ~ 4578665 (+)
G381655 NA other upstream 48189 4120387 ~ 4122344 (+)
G381491 NA other upstream 543678 3625736 ~ 3626855 (+)
G381120 NA other upstream 1329408 2839221 ~ 2841125 (+)
CI01000189_00987665_01058757 PACRG other upstream 3111148 987525 ~ 1059385 (+)
G379799 NA other upstream 3157630 1012546 ~ 1012903 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location