CI01000189_04576234_04577598


Basic Information

Item Value
gene id CI01000189_04576234_04577598
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 4576156 ~ 4578035 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000189_04576234_04577598.mRNA
CTTTAAAAAGCGATGTACTGAAAAAAGTCGTCCGTGTATCAGCTCGTCTGTCCAAGAACGTGCTTACCGATGTGAATAATGGAGTCCGCGCGAGCTGAGCGGCACTGCAGGATCCATAAGGAGAGGCTGATCACGAGCAACTCCATCTCCAGTTCTCGCCCCGGTGTATCATCCACGCCTCCACGTCGTTTCAAAAAATCCAGTTCCAGAGAGAAAAAGAGCTTGCGCGAGAACGACCACTATGGAAGAGATCAAGGATGCGTCACTTCTATCTTTCTCCGAGATCTATTAAAATTGAAAGTGAGAAAGGATATTCGCGAGGAAAAAATAAGCTCTCAAGGGAAGGAAAGCAGAAAAGGAGGGAAGTTCGCCGCACTAACAGCGAGTCCAGAAGTGGGAGAGAAGAAAAAGGCGACCTCCGGCGCTCCGTTTATCGGTGGATATTTTGCCTGGATATTTCTTGAGACGACACTAACAGAAATATCTCTTAATTGTTTGGTGAAGGCTATCAGGTCGTCAGCTTGGATCACTCGGACCTGGACAGCGCCACAGCGCCCCTATGGTGACTCGGATGAACTGCTGTCGCGAGGCTCTCTGAGAACCCTACAGATTAGAAATTAGTTGAAACGGCAAAATTCAAACTTTTTTATGCAGTGAATGTATTAAAAGGTCATTTACATGATTTTCAGGTAAATGTTTATATAGTTTTTCTTTTCAGCTTCGTTTCCTAAGGTAAATCTTAACTATCTTTTCATAAAATTAATTTTGAAATACTATAATACCATATGAAATACCATATTGGCTAAATGACAGAAAATGAATGATGATTAACAAAACAAATCTTAATATAGTAGATCTAGTTCTAGTAGAATATTTTTATCCCCACAGATTTATTCTTCAATGTGCTGAATCCATCATATAAAAATCCAAATATGTTGAATTACAGAAATGGGAATTAAACTGATAGCATAATACATTTCAATTCATCCCTCTTTTAAGGAACTTACAAGTAAACGAGGCAAATGCATGCCATACATGTTAAAATGAAACTAGTGTGA
>TU436375
CTCTGCTCCACGTGACCAAAGAATCGAAAGATCGGAACGGTACGGTAAAAACCAAGGAGAAATGAAATCTGCGCGCGCCAGAGAGAGTCGCCACAGCGGAGTGGGCGGCGGGAGGTCCAGCACAGCCCTGAGCGCGTGAAGTTCAACCGACCACCAGGAAGAAGAATTTCCTCAAATATTTAATTCTAAACATTTTTTCTTCTCAGTGACACAAGCTCTCACTGATTTTGAATCAGGGCTTAAAGAAAAGTTGATAATACGGACGCTTAAAATTCTCTACAGAAGTTCGCCGCACTAACAGCGAGTCCAGAAGTGGGAGAGAAGAAAAAGGCGACCTCCGGCGCTCCGTTTATCGGTGGATATTTTGCCTGGTACTTTATATAGACCCCGCTAGTACACTGAAAAAGAAAAGAAACGGAGTCTGTAGCAACCACGGAACGAAGGAAAACAAGGGTGAATGAGACTGAAATGAATTGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000189_04576234_04577598.mRNA False 1058 mRNA 0.40 3 4576156 4578035
TU436375 True 479 lncRNA 0.47 1 4576711 4577189

Neighbor

gene id symbol gene type direction distance location
CI01000189_04170533_04184962 CCSER2A coding upstream 390883 4170533 ~ 4185273 (+)
CI01000189_04103153_04114542 FAM149B1 coding upstream 460819 4103153 ~ 4115337 (+)
CI01000189_04099205_04099517 MRPL57 coding upstream 476432 4099205 ~ 4099724 (+)
CI01000189_04049709_04050966 NA coding upstream 524457 4049709 ~ 4051699 (+)
CI01000189_04038185_04043995 CALML6, CALM2, CALM3, CALM1 coding upstream 531562 4038185 ~ 4044594 (+)
CI01000189_04674916_04701633 HHAT coding downstream 96881 4674916 ~ 4701679 (+)
G381756 NA non-coding upstream 62080 4513483 ~ 4514076 (+)
G381682 NA non-coding upstream 305868 4270018 ~ 4270288 (+)
G381681 NA non-coding upstream 306581 4269343 ~ 4269575 (+)
G381627 NA non-coding upstream 487966 4085628 ~ 4088190 (+)
G381636 NA non-coding upstream 519293 4056378 ~ 4056863 (+)
G381705 NA non-coding downstream 464 4578499 ~ 4578665 (+)
G381786 NA non-coding downstream 18441 4596476 ~ 4596717 (+)
G381792 NA non-coding downstream 48687 4626722 ~ 4626948 (+)
G381808 NA non-coding downstream 90093 4668128 ~ 4673372 (+)
G381655 NA other upstream 453812 4120387 ~ 4122344 (+)
G381491 NA other upstream 949301 3625736 ~ 3626855 (+)
G381120 NA other upstream 1735031 2839221 ~ 2841125 (+)
CI01000189_00987665_01058757 PACRG other upstream 3516771 987525 ~ 1059385 (+)
G379799 NA other upstream 3563253 1012546 ~ 1012903 (+)

Expression


Co-expression Network