G381627


Basic Information

Item Value
gene id G381627
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 4085628 ~ 4088190 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU436283
TTCACTTGAAGCATTTAAAATGACTGATTTTCGTTTTTAGCGATTTGTCTTTTATTTATTTAGAAAAAAGTATAGAATTTTAATATCAGTTAGATCATATGAAATAATAATATGAAAATAATCATCAGCTATAATTTTAATACCTTTAAACCAGTCTACAGAGTTTTTATAGCACACAGACTGAGCACTGAACATTTGTTGTCCTGTAAGAATTGAATGTTGCATGAGGTTTAAAGACATTGCTTTCAATCATTTATGAGCCTAACAGATACATTACCCACAATGCACCACTGCAGCGGTCATATTTCACATAGATGCATTACAAGCACTGACAGATGCCCCACCTGCATCCATATGGTAGATCCTTCCCCAACCACACGCTCACTGCACAATAAATAATGACAGACATTCTCATAAACAAGCTCAAATTGGCATTTGTAAGGCCACCTCAGGTTTCACACTAGTGCTGCAAATCGCTAAAAGAAAAAAAAAAAGAAGATGTTCCTCTGGTTAGAACGAAAGATTAGGTTATAGGATGAACTTGTCTCCTACTCCTTCAGCTTTCCCATGCCTTCCCTTACCCTCCTACAACAGGAAGATCACTGACTAATTCTGTTACTCTCTGCAAAAGATCTTTTACTCTCTTAATCTCTCTGCAATCAGAAGGTCTATCAGAGTAAACAAAATCAAATTTTTGCTGACAGAGATTAATCCACCTGTGAGATCCTCCATGTTTAGTTCACCTGGGCATCAAAGCAGCACTATTCTAGACACTCTCCTTTTCATTTCCCTCTTTCTGTTTGATTCGTTTTGCTCCAAAAATAGTTGCCTGCCTTGTTGCCACTGTGTGACTCGACTCACAATTGATTTCTATAAGTTTAAAGTTAGCATGTTGCTAAGCTAACAGCTTTATACATTAATTTGCAAAAAATAGACAAATGTTGAGTAAAAACTGAAAAAACTACATTACTGTAGCTTAATCAGTAGAACATGGTGATAGCAACTGCAATGTCATAATTTAGAATCTCAGGAAATGTATGAACTGATAAAATGTGTACCTTGAATGCAATGTAAGTTACATACAGTCAAACTAAAATTTATTCAGACACCTTGAACATTTCATTCATTATTACAATTCATTCACTATAGTTTAAAAAAATGGTAATAAAATATGACAAGATCAGATAACACTTAAGCAAAACATGGTCAGGTCAAAGTGTCTGAATAATTTTTGGTCCCAAATTTTTATCAATTTTACTGGTAGTCCACTGTATGAAGAAAGTTTTGGGTAAAATATGTCACAGTTTACTTTATTTTGCTATCCTCTCTTACATAAATTAACTATAGTGTCCTGTACCCACCAGTAAAAAAAAAAAATATATATATAAAAAATATATCTAGTGTCTGAATAATTTTTGGTTTGACTGTATGCCAAATACATACAATACTTTGTAACATTATAAAATTTCGTACTGTTTTTTCCCCTCCAAAAAATCTTGACGAAGCCATAAACGCACACAAACTTTAGAACAGTAGTGTATATTCTATTGTAATATTTATTAATATATTTTATTTCCATTATATTTCATTAGACTTAATAGCTTTATTTTGACTAATTTATTGATACTTTTTGGCTTTGAACAAATAAGTATTTATAATCATATCTTGCATTGTCCATCTTGGACAGTTTTTTTTTTTTTTTCATTTGTTTCAATCATTCTGGGATTTTCTTATCCATTAAGGATACATACAATGCCATCTTAAAATTTAGCCAAAAATTTCTGAATGCAGCGTAATGATGCAGCCTTCATGTTGAGAGCGTGCCTATGCTGCCTTAAAAGACTGCTTATATAGGCAGCTCACTAGGTTTTGGCTTCTGTGTGAAGCTCCTACAATAAAAGCAAGGCACTACTCTACATGAAGAACGTGTAGGTATACGTACGAGTAGTCGTCAAACACACATCTCCATGGTGCAGAGGCCGTGGTGCAGGGGGAGAGTGTGGCATCAAAACACACATAAATAACATGAGACGCACAGACATACACAGGCTGATGAGGTTAATGAGGCATTTGAAACAAACAAACAAAAAAAGGCACAAAGACAGACAGGGAGTTAGTTGGCAAACAAAAAGCTCAGCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU436283 True 2141 lncRNA 0.34 2 4085628 4088190

Neighbor

gene id symbol gene type direction distance location
CI01000189_04049709_04050966 NA coding upstream 33929 4049709 ~ 4051699 (+)
CI01000189_04038185_04043995 CALML6, CALM2, CALM3, CALM1 coding upstream 41034 4038185 ~ 4044594 (+)
CI01000189_03967133_03967547 NA coding upstream 117954 3966981 ~ 3967674 (+)
CI01000189_03884911_03893327 SLC16A9A coding upstream 191049 3884911 ~ 3894579 (+)
CI01000189_03865371_03880187 CCDC6A, CCDC6, CCDC6B coding upstream 205327 3864646 ~ 3880301 (+)
CI01000189_04099205_04099517 MRPL57 coding downstream 11015 4099205 ~ 4099724 (+)
CI01000189_04103153_04114542 FAM149B1 coding downstream 14963 4103153 ~ 4115337 (+)
CI01000189_04170533_04184962 CCSER2A coding downstream 82343 4170533 ~ 4185273 (+)
CI01000189_04576234_04577598 NA coding downstream 487966 4576156 ~ 4578035 (+)
CI01000189_04674916_04701633 HHAT coding downstream 586726 4674916 ~ 4701679 (+)
G381636 NA non-coding upstream 28765 4056378 ~ 4056863 (+)
G381634 NA non-coding upstream 33305 4052099 ~ 4052323 (+)
G381622 NA non-coding upstream 38464 4046031 ~ 4047164 (+)
G381632 NA non-coding upstream 54322 4030319 ~ 4031306 (+)
G381681 NA non-coding downstream 181153 4269343 ~ 4269575 (+)
G381682 NA non-coding downstream 181828 4270018 ~ 4270288 (+)
G381756 NA non-coding downstream 425293 4513483 ~ 4514076 (+)
G381705 NA non-coding downstream 490309 4578499 ~ 4578665 (+)
G381491 NA other upstream 458773 3625736 ~ 3626855 (+)
G381120 NA other upstream 1244503 2839221 ~ 2841125 (+)
CI01000189_00987665_01058757 PACRG other upstream 3026243 987525 ~ 1059385 (+)
G379799 NA other upstream 3072725 1012546 ~ 1012903 (+)
G379600 NA other upstream 3588720 475615 ~ 496908 (+)
G381655 NA other downstream 32197 4120387 ~ 4122344 (+)

Expression


Co-expression Network