RNA id: TU467401



Basic Information


Item Value
RNA id TU467401
length 336
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G406772
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 2720213 ~ 2720548 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CATGGGCACCCTGACTGGTCTGCGGCTATGCAGCCCCATACGCAACAAACTGTGATGCACTGTGTATTCTGACACCTTTCTATCAGAACCAGCATTAACTTCTTGAGCAGTTTGAGCTACAGTAGCTCGTCTGTTGGATTGGACCACAAGGGCCAGCCTTCGCTCCCCACGTGCATCAATGAGCCTTGGCCGCCCATGACCCTGTCGCCGGTTCACCGCTGTTCCTTCCTTGGACCACTTTTGATAGATACTGACCACTGCAGACCGGGAACACCCCACAAGAGCTGCAGTTTTGGAGATGCTCTGACCCAGTCGTCTAGCCATCACAATTTGGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU467243 lncRNA downstream 13521 2705521 ~ 2706692 (-) True G406630
TU467344 lncRNA downstream 188205 2531792 ~ 2532008 (-) True G406715
TU467152 lncRNA downstream 624857 2095043 ~ 2095356 (-) True G406551
TU467140 lncRNA downstream 662327 2057670 ~ 2057886 (-) True G406539
TU465524 lncRNA downstream 689776 2030201 ~ 2030437 (-) True G405068
TU467410 lncRNA upstream 108669 2829217 ~ 2829455 (-) True G406779
TU467418 lncRNA upstream 200762 2921310 ~ 2922385 (-) True G406786
TU467422 lncRNA upstream 208792 2929340 ~ 2929549 (-) True G406790
TU467475 lncRNA upstream 337158 3057706 ~ 3058006 (-) True G406842
TU467504 lncRNA upstream 400449 3120997 ~ 3121253 (-) True G406868
CI01000299_02670695_02682116.mRNA mRNA downstream 38097 2670596 ~ 2682116 (-) True CI01000299_02670695_02682116
CI01000299_01693958_01696561.mRNA mRNA downstream 1022908 1692924 ~ 1697305 (-) True CI01000299_01693958_01696561
CI01000299_01419938_01421048.mRNA mRNA downstream 1299165 1419529 ~ 1421048 (-) True CI01000299_01419938_01421048
CI01000299_01338052_01368900.mRNA mRNA downstream 1350837 1337872 ~ 1369376 (-) True CI01000299_01338052_01368900
CI01000299_01222994_01268707.mRNA mRNA downstream 1449887 1222859 ~ 1270326 (-) True CI01000299_01222994_01268707
CI01000299_02723315_02728716.mRNA mRNA upstream 2672 2723220 ~ 2728753 (-) True CI01000299_02723315_02728716
CI01000299_02761916_02788258.mRNA mRNA upstream 40866 2761414 ~ 2788437 (-) True CI01000299_02761916_02788258
CI01000299_02833341_02845817.mRNA mRNA upstream 112542 2833090 ~ 2845870 (-) True CI01000299_02833341_02845817
CI01000299_02850281_02876863.mRNA mRNA upstream 129733 2850281 ~ 2876863 (-) True CI01000299_02850281_02876863
CI01000299_02891830_02905146.mRNA mRNA upstream 171026 2891574 ~ 2905146 (-) True CI01000299_02891830_02905146
TU465509 other downstream 702163 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 839225 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 1060213 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 1644322 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 2047357 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 1420570 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 1755446 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 2205420 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 2720789 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 3098021 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile