RNA id: TU467587


Basic Information

Item Value
RNA id TU467587
length 3711
lncRNA type antisense_over
GC content 0.40
exon number 4
gene id G406941
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3312383 ~ 3316446 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAAAACCCATGTGGAGCTCTGAAAGCTGTTATCCAGTCAACAGTCACCCATTTCAGAGCATGTGAACGGTGCAAAATTGAAGTTGTACATAAAGTCAAAAGCAGCAGCTTTCTTTTAATGAACACCAGCAGAAAGCTGGAGCCTGATCTCAGTCTGAAGCCTCTGGTCTTTAGAAAGGCAGGGTACATTTAGGGTGTGTTCACACTTGGCAGATTTGGTTCGATTAAAAAAAATTCTGGTGAGGTGCTCTGTTGATGCAGTTCATTTGAATAAGTGTGAACCTTGGTGTGCACCCAACAAGCGGACCAGCTTTTTGGTGCAGTTTGACTAAATATAAACATAACACGGACATGCGACCCTACATGCGACTCTACCTATTTTTTCTCGTCATATGATCTATATGTTGCCCATTACACTTCAGTACAGGCGTCAGAACCATGTCTCCTTGCAGCAGATCTTTGTGTTCAACAAAGGAACACTTTTTGTTAAACTGGTTAAAACTCTCTTCACATCCAGCAATCAATAATAGAAGTATTCTAAATATTAAATACATATCTTCTGTGGATTTCTCAGGACCAAAAAATGTCTGTTCAATTGGTCCTAATGCAATGATATGATCTCCTACCTGCCTGTCAACATGTATTTACATTCCTCCGCGCACCTGCTCGCGCAGACGTCATCAGCGTAAGCGGCGCGACACAACACGTCAAAAGACAACAGAACCCATTATAATCAGTGATACTGTCTACACTCTATGCGGCGCGGGGCGAATTCCCGACAGTAAACGGATTCCCCGTTCTATTTCTGACATAGTCCAAGTGCTTTGAAAAGTTCAGTTTGTCGCGTTCAGCGTAGACAGCTTTTAGCTGTTGCGGCGCGATGCAATGCGACAACTGTAAGGCTATGCAGAGTTGTAGACAGACAGTCACCGAGCACCACAAACAAACAGCGGCCACATTTCACCGTTCCTCCTGAACCAAAACAACAAGCTTATGCTGCGTTGTATATGTGTCGTAACCGCAATTACAAGATGGCAACCCGTGACGATGTCCTCGGACTCGGATTTATGTGTTTCTATGTCAACACTATTAACGCCGAAATGATTCTGCAGCAGTCAGCTGGTACAAGTAAGAGCTCTGTAAGTTGTTGACGTTCATTATTATTGTAATGTTATGTGCTTTGAGACATGAGGTAATTTAACACAGACTCTGCTGTGTGTTTTGAAGGAGGAGTGGCTTTGAAGACGCTCTGAAGGGAGGGTGGGATCTTATACTTTCAAAGCTAGTTTTTTATTGCTAGCCTCTCCTGATAAAAAAAAAAATACCACTATGACACACACACACAACGAGCACATTTAGCCCAACACAAAGGACAAATGGTGCTTTGCCACGTCAAAACAAGTCATTTCACTCGGCGACCATCTTTGAAACGCCTCTGGGGAATGCAAGTGCAGCTCCTATCTCTTTGAATGGGGAAACATCAAATTTTCCAAAGCTGTTTGCCAAGCTTTCAATTAAATTTCATAAATTTTGTTTCTAAACGCTCGAATCATGACAAAAAAACCTGTATTTTTCAGGCTGGATCAAGCTAATGCACATGTGCAGTCCTAAGCGCATCTGACTGTTTCTATAGGAACCAAAGTTCTAATAGCCGCTGCAGTGACGCGATGACTTTACCAATCGGCGATTGGCTACGAGTGATGCGTCTAGTGTTATTCTATAGTCTTTGGTCGCATACAGTGTAGACAGCTTTTAGCTGTTGTGATGCAAGCGACAACATCCGGTGTAGTGTTAAAATGACAGTGTGAACGCTAAGCGAACCAGGACTAAATGTATAATTTTTTTGTTTTTTTGATTCGGACCAAAACAAACCAAGAGAACTGGATAACAAGTGTGAACACACCCTTAAAGGAACAGTTTGCCGAAAAATGGAAAGTCTGACATTGTTTACTCACCCTCAAGTCTTAATCCACATGATGTTCTTTCTTCCAAGGAACGCTGGATTTGATGGTGCTTTTTACATTCCCAGGCTTCATTAACATTCACTGTATGGAGAATAGCAGCCTGGACATTCTGAGAAATAACTTTTCTAAGTCATACAGCTTTGGAAAGACATGAGGGTGAATAAAGGACAGAAATTACATTTTTGGCTGAACTATTCCATTACATCACCTGATGATAAATGTTAATACATGTTAGACATACTGCATCCACATCAGCAATGCATTTTCATCTTCAAACAACAACAAAAAGCATAATTGAGGACACATTTTATAGCTCCTTTATATTTAGTTGTAAAACAGCATTGTGAAAAAAACTACTCTAAAAAGTCAAATTAGGAGGAAAAAATTGGGTGTTTAAAAACATTTGTCTTTTAATATTTGTTTTAATAAAATTTCTAATAAAACATGGACAGAAGTGGGGTTGGGACAGTCTACGGCAGCCCTAAACCTTTGGTACATTCAGCACAAATATCAACGCAAAAGCCTTAATACAAAAAACAAAGATCTATCTGGTTTGTATTAATGACCTAGCCAGCCAAAATTGAATTGACAAAGAGGATATGCTTGTATTTTTCTTCTGTTGCTATTCCAAAATTTGATGGACCTCATGGCAGTTTCAACTACGCCAGTTTTCACTGGAAGCGATATTAATTTCTTACACAAAAATTCAGGTTACAAAACATTCAGAACTAGAGTACAATCCAGCGTTCCTCAGCCACGGCAGTGTTTCATAAAAGGCTGGGTTGAGTGAACGCAAACGGAAAGGTCTGGAATGTATTGATATGGTTTTTTTTGTGGGCTTGATATTCCAGTTTCAAATCATACAAGAAAACACGGTCAGACTCGAGAGTAGAGTACAAAAATGAAAAGGAAAAGGGGGGAAAACATTCAAGAAAGCTGTGTTGACATCAGCAAACATTCATGTAAACTAAAGCTATATGAGGATATGGAAATAATAATAAAGTCATCATGAAATAAGCCATTTTGAAATGGTTTGGGTCAGTTTTAATTTCATGTTGACTTGTTGAGTGGGTATATGTGACCATTCTCTCTTTCAAAATGTCATCAGAAATAAAACTGTCATCTGAGGACAACGGAAAGGTCAGAAGGTCATAAAATCATCATTTTTCTATCATTTAGTGGTCACATTCATGATGTTGTAGTGCGTCAGTGTAACATGCCCTTTGAAAACGTCACGTGTGAGAGCACATGCACAACCAAAATCATTCAAAAGTGTCACAAATCTGACACGACAGCTGGACAGAATACGCTTTCAAAACAAACATGTGACATGGACTCGTGTATAAATATGATAAAAAGAAGAGAGAACACACATTTCAATTCAATATACAGGGCAGCGCTGTCATGTGTCTTGCTTGAGGCGATCTGAGACGTCTGAAAAAGCTCACAACACTATATTTGTTCATTCACGCTGTATTTTGATGCTCCGTAAAAAAGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGTGATACGGTGTACAAAATATAGTGCTTCTGGTGTCTGTTACTTCCTTTGCTCTTCTAGACGTGTTGAGGAAATGTATTTGTTCAGCTCAAAGTGCAAAGGTCAACATTCACTCCAAACCGAAAGTGCTGGTCTCCTCCACTGCCGTCAGCATCTTCTCGTACAGCATGGAGAAGGAGGGATACGGGGGGAGGTCCAGACGGTTGAAACATGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467588 lncRNA downstream 7193 3303752 ~ 3305190 (-) True G406942
TU467578 lncRNA downstream 17246 3289462 ~ 3295137 (-) True G406932
TU467554 lncRNA downstream 72535 3239309 ~ 3239848 (-) True G406912
TU467498 lncRNA downstream 115384 3196293 ~ 3196999 (-) True G406862
TU467508 lncRNA downstream 136462 3174373 ~ 3175921 (-) True G406872
TU467571 lncRNA upstream 17597 3334043 ~ 3335207 (-) True G406927
TU467573 lncRNA upstream 57474 3373920 ~ 3401249 (-) True G406928
TU467617 lncRNA upstream 98557 3415003 ~ 3415287 (-) True G406971
TU467618 lncRNA upstream 101638 3418084 ~ 3418322 (-) True G406972
TU467624 lncRNA upstream 120341 3436787 ~ 3437005 (-) True G406978
CI01000299_03206204_03214303.mRNA mRNA downstream 98080 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
CI01000299_03104921_03106385.mRNA mRNA downstream 205998 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_02951402_03057288.mRNA mRNA downstream 255095 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
CI01000299_02891830_02905146.mRNA mRNA downstream 407237 2891574 ~ 2905146 (-) True CI01000299_02891830_02905146
CI01000299_02850281_02876863.mRNA mRNA downstream 435520 2850281 ~ 2876863 (-) True CI01000299_02850281_02876863
CI01000299_03341031_03366645.mRNA mRNA upstream 24320 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_03492360_03492614.mRNA mRNA upstream 175768 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
CI01000299_04136702_04142005.mRNA mRNA upstream 818374 4134820 ~ 4142125 (-) False CI01000299_04136702_04142005
CI01000299_04158468_04164223.mRNA mRNA upstream 841555 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
CI01000299_04171373_04175441.mRNA mRNA upstream 854703 4171149 ~ 4175441 (-) True CI01000299_04171373_04175441
TU465509 other downstream 1294333 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 1431395 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 1652383 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 2236492 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 2639527 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 824672 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 1159548 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 1609522 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 2124891 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 2502123 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU2062 True 5198 TUCP 0.42 1 NC_053112.1 4455207 ~ 4460404 (+)
tiger barb (Puntius tetrazona) TU2062 True 2120 TUCP 0.35 2 NC_056699.1 6533502 ~ 6536957 (+)