RNA id: TU467653


Basic Information

Item Value
RNA id TU467653
length 213
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G407005
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3462701 ~ 3462913 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAACCACACAGAACACCCTAGAAGCTGCATTGCAACATGCTAAACATTTAGAATTCTTAAACAACAGCCTAGCAACGCCCTAGCAACCACACAGAACACAATAGAAGCTGCACAGCAACACACTAAAAATATTCCGAATTCTTAAACAGCCTAGCAACACCCTAGAAACCACACAGAACACCTTAGAAGCTGCAATGCAACATGCTAAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467628 lncRNA downstream 20377 3442088 ~ 3442324 (-) True G406982
TU467624 lncRNA downstream 25696 3436787 ~ 3437005 (-) True G406978
TU467618 lncRNA downstream 44379 3418084 ~ 3418322 (-) True G406972
TU467617 lncRNA downstream 47414 3415003 ~ 3415287 (-) True G406971
TU467573 lncRNA downstream 61452 3373920 ~ 3401249 (-) True G406928
TU467659 lncRNA upstream 4346 3467259 ~ 3467752 (-) True G407011
TU467660 lncRNA upstream 6178 3469091 ~ 3469378 (-) True G407012
TU467663 lncRNA upstream 9208 3472121 ~ 3472623 (-) True G407015
TU467668 lncRNA upstream 12617 3475530 ~ 3475796 (-) True G407020
TU467671 lncRNA upstream 14687 3477600 ~ 3477984 (-) True G407023
CI01000299_03341031_03366645.mRNA mRNA downstream 95973 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_03206204_03214303.mRNA mRNA downstream 248398 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
CI01000299_03104921_03106385.mRNA mRNA downstream 356316 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_02951402_03057288.mRNA mRNA downstream 405413 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
CI01000299_02891830_02905146.mRNA mRNA downstream 557555 2891574 ~ 2905146 (-) True CI01000299_02891830_02905146
CI01000299_03492360_03492614.mRNA mRNA upstream 29301 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
CI01000299_04136702_04142005.mRNA mRNA upstream 671907 4134820 ~ 4142125 (-) False CI01000299_04136702_04142005
CI01000299_04158468_04164223.mRNA mRNA upstream 695088 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
CI01000299_04171373_04175441.mRNA mRNA upstream 708236 4171149 ~ 4175441 (-) True CI01000299_04171373_04175441
CI01000299_04186183_04196219.mRNA mRNA upstream 722054 4184967 ~ 4197884 (-) True CI01000299_04186183_04196219
TU465509 other downstream 1444651 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 1581713 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 1802701 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 2386810 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 2789845 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 678205 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 1013081 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 1463055 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 1978424 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 2355656 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile