RNA id: TU468770


Basic Information

Item Value
RNA id TU468770
length 367
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G407975
representative False

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 6183135 ~ 6183535 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGCTTTTTACAATGTAGATTGTGTCAAAGCAGCTTTACATTGATAACTGGTACATTGTTTGGCTGCACAGCAGCTCTTAAAGAATAGTGTCAATGCAGGCAGATCAAAGCACTGTTGAATATCAAATGTCAAGTCAAATGTCAAGTGTCCCCAACTAAGCAAGCCAAAGGCGACAGCGGCAAGGAACCCAAACTCCATCAGGTGACATCAGGTGGCAGACAAGTGGCAAATTGGTGTTAAAATGGAGAAAAAAACCTTGGGAGAAACCAGGCTTAGTCGGGGGGCCAGTTCTCCTCTGGCCAACAGTGCTTTGTTACGATTCAGGTAGCTATCATAAGTCCGACAGGATCGCAACATTCAAAGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468766 lncRNA downstream 37211 6145497 ~ 6145924 (-) True G407971
TU468684 lncRNA downstream 68645 6108478 ~ 6114490 (-) True G407895
TU468707 lncRNA downstream 75882 6099848 ~ 6107253 (-) True G407912
TU468704 lncRNA downstream 83677 6093291 ~ 6099458 (-) True G407909
TU468744 lncRNA downstream 91254 6091491 ~ 6091881 (-) True G407949
TU468718 lncRNA upstream 37265 6220766 ~ 6222379 (-) True G407923
TU468734 lncRNA upstream 42911 6226412 ~ 6232275 (-) True G407939
TU468784 lncRNA upstream 205875 6389376 ~ 6389644 (-) True G407986
TU468722 lncRNA upstream 208543 6392044 ~ 6392356 (-) True G407927
TU468799 lncRNA upstream 233625 6417126 ~ 6432767 (-) True G408001
CI01000299_06145156_06154533.mRNA mRNA downstream 28602 6144955 ~ 6154533 (-) True CI01000299_06145156_06154533
CI01000299_06130943_06144384.mRNA mRNA downstream 38267 6129073 ~ 6144868 (-) True CI01000299_06130943_06144384
CI01000299_06037407_06054548.mRNA mRNA downstream 128587 6036217 ~ 6054548 (-) True CI01000299_06037407_06054548
CI01000299_05974659_05985294.mRNA mRNA downstream 197529 5974391 ~ 5985606 (-) True CI01000299_05974659_05985294
CI01000299_05946615_05949088.mRNA mRNA downstream 233901 5946333 ~ 5949234 (-) True CI01000299_05946615_05949088
CI01000299_06185794_06195015.mRNA mRNA upstream 1987 6185488 ~ 6195015 (-) True CI01000299_06185794_06195015
CI01000299_06197276_06199730.mRNA mRNA upstream 13105 6196606 ~ 6199730 (-) True CI01000299_06197276_06199730
CI01000299_06208641_06214104.mRNA mRNA upstream 25111 6208612 ~ 6214104 (-) True CI01000299_06208641_06214104
CI01000299_06242885_06246604.mRNA mRNA upstream 58495 6241996 ~ 6246604 (-) True CI01000299_06242885_06246604
CI01000299_06257032_06266210.mRNA mRNA upstream 72356 6255857 ~ 6266210 (-) True CI01000299_06257032_06266210
TU468578 other downstream 259002 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other downstream 347146 5835889 ~ 5835989 (-) True G407805
TU468421 other downstream 727027 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 1254317 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1632414 4475994 ~ 4550721 (-) True G407413
TU468694 other upstream 348500 6532144 ~ 6534655 (-) True G407899

Expression Profile