RNA id: TCONS_00000161


Basic Information

Item Value
RNA id TCONS_00000161
length 1314
lncRNA type retained_intron
GC content 0.38
exon number 3
gene id XLOC_000085
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 7517449 ~ 7554463 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGAGCCTGCATGGTGAGTCCTACcacaaaattacatatttaaaatatctgtaggggaagacacggtggctcagtggttagcactgtcacctcacggcAAGCAGGTCTGGGAAATGTATGCATATTCTGTGTGACCAATGGAGGATGTTATAAATCACTGTGCTGGCAGGAGGGGATCCGTCATTGCCTGTTGTGTGAACAGAGGCATGATGGGATTTGATGTCTTCTCATCTGCAGTTTGCAGACTGGTGCATGAATTATGGGAGACACGGCTGCCGGACTCCAGATACACCGTTCTCACTGTTTGAAGGGATGGCGGGGACAATTTATTTCCTGGCTGACCTTCTGCAACCAGCTAGAGCCAAGTTCCCCTGTTTTGAGGTGTAAAGGTTGTTCGAGGATGTATGCAGAGTTTAGCCTAAGCTTCTCCAAGCTGGATGGAGTGTCCTCTGATGGTGGATTAGTACTGTCTCGCTCTGCATGTGCGTCTGCATGCCTCGGCCCTGTCTCAATTCATGCTAAATCTTACGAGAGGTGTGTATATGTGGagaacagtgcttttttttctccccccatTAGAAGAAGGTGGATGGGTTCTTGACTATATAGATGAGGGTTAATTTGAAACTataaagttaaagggatagttgacacAAAAATAACAATTCTGACATTAACTCACTTGGTTCAATACCTTTTTGAGTTGTTTTCTTCTGGTTAACTTAAAAGATGATATCCTAAGAAAATGCTGGTCGCTgccacccattgacttccataagatTTTTTGAGTGCCGAcaatcaacattcttcaaaatatcttcttttgtgttgagcagaagaaagaaactcataaaggtttacaacaacatgttcatttttgggtgaactatccctttaagcttttaaaataaatgtttaatatgtttaacagattGCACTGATTTTTGTTGTACATTTGTTGATGTTCTTGAACATGTGTTTGGTATTATATATTACTAAGACTCattgaacatttattattttgatgtatCTGTTAGGATAGGATTTTTTTTAGGTTTAGAATATtgtgatatgacaaaaaaaagtgtaactGCGTTTTGAAACTAATAATTGCATTCATATGCTTTGAGTAGGATTAATGCTTTGCTTTCTGtattaaaatgagtttatttTGATAATACTAATAGTGGTATCAGAGGATGTGCtgcaaaattgtttgttttttaaaagatggTAGTAAAATATGTTAGCATTTGCCTTTTACAGTataatttgtacattttcatCTGCAcagcaataaaaataacaaaaca

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0014809 regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion biological_process
GO:0048468 cell development biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0014819 regulation of skeletal muscle contraction biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0006941 striated muscle contraction biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0045214 sarcomere organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0003008 system process biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0044057 regulation of system process biological_process
GO:0014722 regulation of skeletal muscle contraction by calcium ion signaling biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0030424 axon cellular_component
GO:0030426 growth cone cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0005886 plasma membrane cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0033267 obsolete axon part cellular_component
GO:0044297 cell body cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0016020 membrane cellular_component
GO:0150034 distal axon cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043295 glutathione binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005523 tropomyosin binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0030172 troponin C binding molecular_function
GO:0031013 troponin I binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0004364 glutathione transferase activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko00480 Glutathione metabolism

ZFIN:

id description
ZDB-GENE-040924-1 Predicted to enable glutathione binding activity; glutathione transferase activity; and zinc ion binding activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in cytoplasm and membrane. Predicted to be active in plasma membrane. Orthologous to human LANCL1 (LanC like 1).

Ensembl:

ensembl_id ENSDART00000135112

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000159 lncRNA upstream 5923 7517449 ~ 7523930 (+) False XLOC_000085
TCONS_00003025 lncRNA upstream 17091 7512529 ~ 7512762 (+) True XLOC_000084
TCONS_00000156 lncRNA upstream 413939 7092273 ~ 7115914 (+) True XLOC_000082
TCONS_00000155 lncRNA upstream 434379 7092273 ~ 7095474 (+) False XLOC_000082
TCONS_00000153 lncRNA upstream 539826 6956913 ~ 6990027 (+) True XLOC_000080
TCONS_00000166 lncRNA downstream 6967 7546683 ~ 7554215 (+) True XLOC_000085
TCONS_00000171 lncRNA downstream 17283 7556999 ~ 7560854 (+) False XLOC_000086
TCONS_00002810 lncRNA downstream 132405 7672121 ~ 7674229 (+) True XLOC_000087
TCONS_00003026 lncRNA downstream 1034061 8573777 ~ 8575057 (+) True XLOC_000097
TCONS_00000190 lncRNA downstream 1035591 8575307 ~ 8577274 (+) True XLOC_000098
TCONS_00000158 mRNA upstream 81058 7414318 ~ 7448795 (+) True XLOC_000083
TCONS_00000157 mRNA upstream 81769 7189856 ~ 7448084 (+) False XLOC_000083
TCONS_00000151 mRNA upstream 604446 6817292 ~ 6925407 (+) False XLOC_000079
TCONS_00000152 mRNA upstream 604740 6862917 ~ 6925113 (+) True XLOC_000079
TCONS_00000150 mRNA upstream 604750 6817292 ~ 6925103 (+) False XLOC_000079
TCONS_00000164 mRNA downstream 1262 7540978 ~ 7550899 (+) False XLOC_000085
TCONS_00000165 mRNA downstream 6543 7546259 ~ 7554463 (+) False XLOC_000085
TCONS_00000167 mRNA downstream 17249 7556965 ~ 7561134 (+) False XLOC_000086
TCONS_00000168 mRNA downstream 17249 7556965 ~ 7561222 (+) False XLOC_000086
TCONS_00000169 mRNA downstream 17261 7556977 ~ 7561071 (+) False XLOC_000086
TCONS_00000154 other upstream 465910 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000149 other upstream 742049 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000134 other upstream 1344321 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000123 other upstream 2027769 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000121 other upstream 2079409 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000208 other downstream 1614378 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 1615277 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000213 other downstream 1678932 9218648 ~ 9221616 (+) True XLOC_000115
TCONS_00000230 other downstream 2512058 10051774 ~ 10054771 (+) False XLOC_000126
TCONS_00000231 other downstream 2512068 10051784 ~ 10058057 (+) False XLOC_000126

Expression Profile

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