RNA id: TU479517


Basic Information

Item Value
RNA id TU479517
length 1571
lncRNA type antisense_over
GC content 0.54
exon number 7
gene id G417466
representative True

Chromosome Information

Item Value
chromosome id CI01000302
NCBI id null
chromosome length 1458622
location 1064008 ~ 1067560 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATTCTCAGTTTTATTTGTCTGCTGAAGTGTGATTTGTGTTGGTCATCAACTGGACCATGCGTACAGTGGAACGTATGGCACTGGAATCTAAGAGAGAGGCGTCCAACAGCATTCGCCAAAATACCAAGCCATGGAAGTCAGTAATAAATACATTTGTGTGCAATAAGAGCGCTTGGTATTTTTCTCTCCCTTGACGTTAGTGTCCTTTTCTCAGTTTATGCTTCTTCTGCTCGCTCCTACGTCATTGCATAAATAACGGCTGTAGAAAAACTGTCCACAGGAGCAATGCACCGTCACTTGGTTCCTAAGCAGGAAGCAATGATACGGGCGCTTTGAGCCAGGCGCTTAGAAGCACTTGCGGTGGACGATGCTGGGGCCGGCCTCATCGTATTCCTGCTTGGTGATCCACATCTGCTGGAAAGTGGACAGGGATGCCAGGATGGAACCGCCGATCCAGACGGAGTACTTGCGCTCGGGAGGAGCAATGATCTTGATCTTCATTGTGCTGGGAGCCAGGGCTGTGATCTCCTTCTGCATACGGTCAGCAATACCAGGGTACATTGTGGTACCACCAGACAGGACGTTGTTGGCATACAGGTCCTTCCTGATGTCAATGTCGCACTTCATGATGCTGTTGTAAGCGGTCTCGTGAATGCCAGCAGACTCCATACCAATGAAGGAAGGCTGGAACAGGGTCTCAGGGCAACGGAAACGCTCGTTACCGATGGTGATGACCTGACCGTCGGGAAGCTCGTAGCTCTTCTCGAGGGAGGAAGAAGAGGCGGCGGTGGCCATCTCATTCTCAAAGTCCAGGGCAACATAGCACAGCTTCTCCTTGATGTCACGGACAATCTCACGCTCAGCGGTTGTGACGAAAGAGTATCCACGTTCAGTCAGGATCTTCATCAGGTAGTCTGTCAGATCACGACCAGCCAAGTCCAAACGCATGATGGCGTGGGGAAGAGCGTAACCCTCATAGATGGGCACATTGTGGGTCACACCATCACCGGAGTCCAGCACAATACCGGTGGTACGGCCAGAAGCGTACAGGGACAGGACGGCCTGGATGGCCACGTACATGGCGGGGACGTTGAAGGTCTCAAACATGATCTGGGTCATCTTCTCACGGTTAGCCTTGGGGTTCAGAGGGGCCTCAGTGAGCAGGGTTGGGTGCTCCTCAGGGGCCACGCGGAGCTCGTTGTAGAAGGTGTGGTGCCAGATCTTCTCCATGTCGTCCCAGTTGGTGATGATGCCGTGCTCGATTGGGTACTTAAGGGTCAGGATACCTCTCTTGCTCTGAGCCTCGTCTCCAACGTAGGAGTCTTTCTGACCCATACCGACCATCACACCCTGGTGACGTGGGCGGCCGACGATGGAAGGGAAGACAGCCCTGGGGGCGTCATCACCGGCAAAACCAGCCTTGACCAGGCCAGAGCCATTGTCGCACACCAAAGCTGTAGTCTCGTCGTCGTCACACATCCTGATGGGTTCTGTGGCTGCTCGTGCTCAGAGTCCTCAAGTCAAACAGAAGTGCCGATGGCTCCTGCTACACATTGAGTCGCACCGCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU479520 lncRNA downstream 7610 1050924 ~ 1056398 (-) True G417468
TU479524 lncRNA downstream 83328 944022 ~ 980680 (-) True G417472
TU479511 lncRNA downstream 140277 923484 ~ 923731 (-) True G417461
TU479510 lncRNA downstream 140725 923076 ~ 923283 (-) True G417460
TU479509 lncRNA downstream 141669 922123 ~ 922339 (-) True G417459
TU479548 lncRNA upstream 12553 1080113 ~ 1080397 (-) True G417496
TU479549 lncRNA upstream 13046 1080606 ~ 1080878 (-) True G417497
TU479550 lncRNA upstream 13634 1081194 ~ 1103513 (-) True G417498
TU479584 lncRNA upstream 47359 1114919 ~ 1116032 (-) False CI01000302_01116405_01119378
TU479585 lncRNA upstream 48097 1115657 ~ 1116769 (-) True CI01000302_01116405_01119378
CI01000302_01043975_01048876.mRNA mRNA downstream 15132 1043352 ~ 1048876 (-) True CI01000302_01043975_01048876
CI01000302_01033394_01042837.mRNA mRNA downstream 21171 1033042 ~ 1042837 (-) True CI01000302_01033394_01042837
CI01000302_01024553_01031712.mRNA mRNA downstream 32296 1023961 ~ 1031712 (-) True CI01000302_01024553_01031712
CI01000302_00991607_00995346.mRNA mRNA downstream 68269 991296 ~ 995739 (-) True CI01000302_00991607_00995346
CI01000302_00897913_00921331.mRNA mRNA downstream 142566 897757 ~ 921442 (-) True CI01000302_00897913_00921331
CI01000302_01116405_01119378.mRNA mRNA upstream 47526 1115086 ~ 1119378 (-) False CI01000302_01116405_01119378
CI01000302_01165866_01178482.mRNA mRNA upstream 97467 1165027 ~ 1178482 (-) True CI01000302_01165866_01178482
CI01000302_01211614_01228844.mRNA mRNA upstream 142307 1209867 ~ 1229710 (-) True CI01000302_01211614_01228844
CI01000302_01232142_01237730.mRNA mRNA upstream 164522 1232082 ~ 1237730 (-) True CI01000302_01232142_01237730
CI01000302_01290758_01347126.mRNA mRNA upstream 223007 1290567 ~ 1347126 (-) False CI01000302_01290758_01347126
TU479513 other downstream 138503 925176 ~ 925505 (-) True G417463
TU479461 other downstream 383514 679622 ~ 680494 (-) True G417414
TU479283 other downstream 876022 186607 ~ 187986 (-) True G417264
TU479556 other upstream 81853 1149413 ~ 1150962 (-) True G417501
TU479663 other upstream 257606 1325166 ~ 1325213 (-) True G417586

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001172 False 1612 mRNA 0.51 7 NC_007112.7 53945934 ~ 53953532 (+)