RNA id: TCONS_00001172


Basic Information

Item Value
RNA id TCONS_00001172
length 1612
RNA type mRNA
GC content 0.51
exon number 7
gene id XLOC_000701
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 53945934 ~ 53953532 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAAAAGCAGAGGACgggtttgtgtatatatatatgtgatgaAGGTTTAAGCAGGTCACTGTGTGTAGCGGGAGCGCTTCAGCTTTACTTCAGGACTCACGAGAACGAGCAGAGGCAGAACCCATCAAGATGTGTGACGATGATGAGACCACAGCTTTGGTGTGCGACAACGGATCAGGCCTGGTCAAGGCTGGTTTCGCCGGAGATGACGCCCCTAGAGCCGTCTTCCCATCCATTGTCGGCCGCCCGCGTCACCAGGGTGTGATGGTTGGTATGGGTCAGAAAGACTCCTACGTTGGAGACGAGGCTCAGAGCAAGAGAGGTATCCTGACCCTGAAGTACCCCATCGAGCATGGCATCATCACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGCGTGGCCCCTGAGGAGCACCCAACACTGCTCACAGAGGCCCCACTCAACCCCAAGGCTAACCGCGAGAAGATGACCCAGATCATGTTTGAGACCTTCAACGTCCCCGCTATGTATGTGGCCATCCAGGCTGTCCTGTCCCTCTACGCCTCTGGCCGTACCACCGGTATTGTGCTAGACTCTGGTGATGGTGTGACCCACAATGTGCCTATCTATGAGGGTTACGCTCTTCCTCATGCCATCATGCGTTTGGACTTGGCTGGTCGTGATCTGACAGACTACCTGATGAAGATCCTGACTGAGCGTGGATACTCTTTCGTCACAACTGCTGAGCGTGAGATTGTCCGTGACATCAAGGAGAAGCTGTGCTATGTTGCCCTGGACTTTGAGAATGAGATGGCCACAGCCGCCTCCTCATCCTCCCTCGAAAAGAGCTACGAGCTTCCTGACGGTCAGGTCATCACCATTGGTAATGAGCGTTTCCGTTGCCCTGAGACCCTCTTCCAGCCTTCCTTCATTGGTATGGAGTCTGCTGGCATTCACGAGACCACTTACAACAGCATCATGAAGTGCGACATTGACATCAGAAAGGACCTTTACGCCAACAATGTACTCTCCGGTGGTACCACGATGTACCCTGGTATTGCTGACCGCATGCAGAAGGAAATCACAGCTTTGGCTCCAAGCACAATGAAGATTAAGATCATTGCTCCCCCTGAGCGCAAATACTCAGTCTGGATCGGCGGGTCCATCCTGGCTTCTCTGTCCACTTTCCAGCAGATGTGGATCACCAAGCAGGAATACGACGAGGCCGGCCCTAGCATCGTGCACCGCAAATGCTTCTAATCACACGATTCAACATCCTATCATTGCCTCCTGCTCAGGAATTAATCATCGATTCCTTGCTCCTGTGGACAGATTTACTACAGCGATGACATAGGGGCGAGCTTTAAAagcataaactgaaaaaaagacacTAGCATCAAGGGACAGCAGAAATACCAAGCGCTCTCATTGCACACAACTGTATTTATTACTGACTTCCATGGCTTGGTATTTTGGTGGATGCTGTTTAAAAGAAACGACAAGGACTCCAGCTCCCTAATAGATTCCAGTGCCATACGTTCCACTGTACACTGATGACCAACACTAATCTCACTTCAACAGACAAATAAAACTGAACatgtatttttaaa

Function

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0090131 mesenchyme migration biological_process
GO:0030175 filopodium cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005869 dynactin complex cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0044297 cell body cellular_component
GO:0030027 lamellipodium cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-267 Acts upstream of or within skeletal muscle fiber development. Predicted to be located in several cellular components, including cell body; filopodium; and lamellipodium. Predicted to be part of dynactin complex. Is expressed in several structures, including adaxial cell; fin; musculature system; pericardial region; and trunk. Human ortholog(s) of this gene implicated in congenital fiber-type disproportion and nemaline myopathy 3. Orthologous to human ACTA1 (actin alpha 1, skeletal muscle).

Ensembl:

ensembl_id ENSDART00000052838

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003175 lncRNA upstream 80097 53864528 ~ 53865837 (+) True XLOC_000699
TCONS_00002880 lncRNA upstream 175195 53760797 ~ 53770739 (+) False XLOC_000697
TCONS_00003176 lncRNA downstream 29082 53982614 ~ 53988776 (+) True XLOC_000703
TCONS_00003177 lncRNA downstream 323711 54277243 ~ 54469289 (+) True XLOC_000712
TCONS_00003178 lncRNA downstream 448401 54401933 ~ 54404147 (+) True XLOC_000713
TCONS_00003179 lncRNA downstream 658306 54611838 ~ 54613479 (+) True XLOC_000715
TCONS_00003180 lncRNA downstream 744641 54698173 ~ 54700755 (+) False XLOC_000721
TCONS_00001171 mRNA upstream 4028 53919110 ~ 53941906 (+) True XLOC_000700
TCONS_00001170 mRNA upstream 82626 53842344 ~ 53863308 (+) True XLOC_000698
TCONS_00001168 mRNA upstream 215398 53714734 ~ 53730536 (+) False XLOC_000696
TCONS_00001167 mRNA upstream 410369 53515089 ~ 53535565 (+) True XLOC_000693
TCONS_00001161 mRNA upstream 557020 53374454 ~ 53388914 (+) False XLOC_000690
TCONS_00001174 mRNA downstream 698 53954230 ~ 53963933 (+) False XLOC_000702
TCONS_00001175 mRNA downstream 703 53954235 ~ 53962640 (+) True XLOC_000702
TCONS_00001176 mRNA downstream 59925 54013457 ~ 54026180 (+) False XLOC_000704
TCONS_00001177 mRNA downstream 59933 54013465 ~ 54026352 (+) True XLOC_000704
TCONS_00001178 mRNA downstream 83545 54037077 ~ 54062112 (+) False XLOC_000705
TCONS_00001166 other upstream 558053 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001160 other upstream 577900 53364510 ~ 53368034 (+) True XLOC_000689
TCONS_00001154 other upstream 884737 52999832 ~ 53061197 (+) False XLOC_000682
TCONS_00001126 other upstream 1810432 52130164 ~ 52135502 (+) False XLOC_000662
TCONS_00001119 other upstream 2262316 51683519 ~ 51683618 (+) True XLOC_000655
TCONS_00001180 other downstream 99572 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001186 other downstream 232507 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001221 other downstream 1174933 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001233 other downstream 1340093 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001304 other downstream 3394366 57347898 ~ 57355033 (+) False XLOC_000813

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU479517 True 1571 lncRNA 0.54 7 CI01000302 1064008 ~ 1067560 (-)