RNA id: CI01000306_03814414_03823373.mRNA


Basic Information

Item Value
RNA id CI01000306_03814414_03823373.mRNA
length 1893
RNA type mRNA
GC content 0.48
exon number 18
gene id CI01000306_03814414_03823373
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 3814414 ~ 3823373 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAGTCTGACCAAACTTACTCTTTTGACAAATACGGTCAAGCTTGGGAGAAATGTGTTCGCTGCACGAGTCGCACAAACAGGAGATTGTCTACATCACTTTCAGTCGCGGCGCTCCGTTAGATCCAGTTCGAGGAGTTTGGCATATGCTAAAGATCTGTTTCTGGGCAAAGTAAACAAGGCTGAAGTCTTTCCCTACCCAGAAATCAGCAATGAAGAACTGGAGGAGATAAACCAACTTGTTCAGCCTGTGGAGAAGTTTTTCAGTGAAGATGTTGATTCTAAGAAGATCGACCAGGAGGCTGTAATTCCTTCTGAGACTTTGAATGGGCTGAAGGAACTGGGGCTGTTTGGAATCCAGATACCTGAAGAATATGGTGGTCTGGGCCTCTCAAACACCATGTATGCCAGGTTAGGAGAGATCACGTCTTTAGATGGGTCTATTGCGGTCACGCTTGCAGCACATCAAGCCATTGGCCTGAAGGGAATTTTGATTGCTGGAAATGATGCTCAGAAAGCAAAATACCTGCCCAAACTAGCAACAGGAGAGCATATTGCAGCTTTCTGCCTCACTGAACCTGGAAGCGGCAGTGATGCTGCATCTATACAGGCACGGGCCACGCTGACAGAAGATGGGAAGCACTTCTTGCTCAATGGCACAAAGTTTTGGATTTCCAATGGCGGATGGGCAGACATCATGACCGTGTTTGCCAGAACTGAAGTTGTTGACAAAGATGGTCAAAAGAAAGATAAGATCACAGCTTTCATTGTAGAGCGGGAGTTCGGTGGTGTCACCAGTGGCAAACCTGAAGACAAACTGGGCATCAGAGGCTCAAACACTTGTGAGATCTCATTTGAAGACACCAAGGTGCCAATCGAGAATGTTATTGGTGAAGTCGGTGGTGGTTTTAAGGTCGCCATGAACATTCTGAATAATGGGCGCTTCAGCATGGGCAGTGCAGGTGCAGGGGTGATCAAGAAGCTGATTGAGTTGACATCAGAATATGCAGGCACGAGAAAACAATTCAACAGGAGCCTTTCTGAGTTTGGAATGATTCAGGATAAGTTTGCTACTATGGCCATAAATGCGTTTGTGATGGAGAGCATGGCTTACCTCACTGCTGGAATGATGGACCGACCTGGAGTCCCAGACTGCTCTCTGGAGGCCGCTATGGTCAAGGTCTTCAGCTCTGAGGGCAGCTGGATCTGTGTGAGCGAAGCCCTGCAGGTTTTAGGAGGCCTGGGCTTCACCAAGAACTACCCCTATGAGCGCTACCTCAGGGACTGCCGTATCCTCCAGATATTTGAGGGCACTAATGAGATTTTGAGGATGTACATCGCACTTACAGGAATGCAGTATGCTGGCAAAATACTAACAGGAAAAATAAAGGAGATGAAGAAGGGAAATGTGGGGGTGGTGTTCGAGATTCTGGGAAAGAAATTAAAGGACTCAGTGGTGAAAACGGTGGACTTTGGACTGACCGGCAAAGATGGTGTTGTGCACCCCAGTCTGACGGAGAGCGCCAAAATGTTCGAGCAGAACGCTGCACTCTTCGGCTCTACTGTGGAAAGCTTACTGTACCGATATGGAAAGACAATCGTTGAGGAGCAGCTTGTGCTGAAGAAAGTTGCAGATGTATTAATTAACCTCTACGCCATGACAGCCGTCCTGTCCCGCACCAGTCGCTCCATCAGCATCGGCCTGCACAACCATGACCATGAGGTGCTGCTCACCAACACTTTCTGCAAGGATGCTCATTTCAAGAACAACTTCTTGTTGACTCAGCTTCAAAAAAATTCCCCGGAGAACAACGATGCCAACATAAAGAAGATCGCCCAGGAGGTCTTATCCAAGAGGGCGTATGTCTGCTCACATCCTCTGGACAGGACCTTT

Function

GO:

id name namespace
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K15980 ACAD9; acyl-CoA dehydrogenase family member 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU496383 lncRNA downstream 31395 3778095 ~ 3783019 (-) True G432288
TU496573 lncRNA downstream 40958 3773221 ~ 3773456 (-) True G432454
TU496571 lncRNA downstream 42246 3771697 ~ 3772168 (-) True G432452
TU496569 lncRNA downstream 44229 3769753 ~ 3770185 (-) True G432450
TU496431 lncRNA downstream 66901 3743981 ~ 3747513 (-) True G432318
TU496437 lncRNA upstream 53994 3877367 ~ 3887196 (-) True G432324
TU496434 lncRNA upstream 92839 3916212 ~ 3922327 (-) True G432321
TU496429 lncRNA upstream 176336 3999709 ~ 4001906 (-) True G432316
TU496577 lncRNA upstream 195734 4019107 ~ 4019342 (-) True G432458
TU496581 lncRNA upstream 203958 4027331 ~ 4027591 (-) True G432462
CI01000306_03784261_03805127.mRNA mRNA downstream 9287 3783605 ~ 3805127 (-) True CI01000306_03784261_03805127
CI01000306_03754616_03760572.mRNA mRNA downstream 53760 3754410 ~ 3760654 (-) True CI01000306_03754616_03760572
CI01000306_03655659_03655928.mRNA mRNA downstream 158486 3655580 ~ 3655928 (-) True CI01000306_03655659_03655928
CI01000306_03647554_03652331.mRNA mRNA downstream 162083 3647554 ~ 3652331 (-) True CI01000306_03647554_03652331
CI01000306_03549983_03607948.mRNA mRNA downstream 206466 3549983 ~ 3607948 (-) True CI01000306_03549983_03607948
CI01000306_03832463_03844882.mRNA mRNA upstream 9031 3832404 ~ 3844882 (-) True CI01000306_03832463_03844882
CI01000306_03905140_03924632.mRNA mRNA upstream 81633 3905006 ~ 3924911 (-) True CI01000306_03905140_03924632
CI01000306_04006646_04006936.mRNA mRNA upstream 182952 4006325 ~ 4008211 (-) True CI01000306_04006646_04006936
CI01000306_04218821_04226253.mRNA mRNA upstream 394626 4217999 ~ 4226253 (-) True CI01000306_04218821_04226253
CI01000306_04236542_04245309.mRNA mRNA upstream 412059 4235432 ~ 4245309 (-) True CI01000306_04236542_04245309
TU496065 other downstream 810523 3000236 ~ 3003891 (-) True G432022
TU495727 other downstream 2065464 1748822 ~ 1748950 (-) True G431728
TU495726 other downstream 2066192 1747526 ~ 1748222 (-) False G431728
TU495821 other downstream 2501980 1311702 ~ 1312434 (-) False G431814
TU495679 other downstream 2651076 1163027 ~ 1163338 (-) True G431706
TU497393 other upstream 719350 4542723 ~ 4545092 (-) True CI01000306_04544349_04545034
TU497685 other upstream 1538270 5361643 ~ 5383763 (-) True G433450
TU497952 other upstream 2217641 6041014 ~ 6041283 (-) True G433670
TU498286 other upstream 2372734 6196107 ~ 6197210 (-) True G433985
TU498319 other upstream 2531807 6355180 ~ 6361643 (-) True G434016

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007957 True 2353 mRNA 0.44 18 NC_007122.7 26685982 ~ 26701611 (-)