RNA id: CI01000306_03549983_03607948.mRNA


Basic Information

Item Value
RNA id CI01000306_03549983_03607948.mRNA
length 1836
RNA type mRNA
GC content 0.58
exon number 11
gene id CI01000306_03549983_03607948
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 3549983 ~ 3607948 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGACGTCGGAGCTGGAGAGCAGCTTGACCTCCATGGACTGGCTGCCGCAGCTGACCATGCGGGCGGCCATTCAGAAAGCGGACGCCCAGAACGCTCACGGGCCGGGCATGGCTAAGAAGAGCGCCCTGCTGGACCCCAACACCACACTGGACCAGGAAGAGGTGCAGCAGCACAAGGACGGCAAACCGCCATACAGCTACGCCAGCCTCATCACGTTCGCCATCAACAGCTCGCCAAAGAAGAAAATGACACTGAGCGAGATCTACCAGTGGATCTGTGACAATTTCCCCTATTACAGGGAAGCCGGCAGCGGGTGGAAGAACTCAATACGGCACAATCTCTCGTTGAACAAGTGTTTTCTTAAAGTGCCTCGCTCCAAAGATGACCCGGGAAAGGGTTCTTACTGGGCAATCGACACAAATCCAAAGGAGGACACGCTGCCCACACGACCCAAGAAGAGGCCACGGTCTGGAGAGCGGGCATCTACTCCATACAGCCTGGAGTCGGATAACTTGGGAATGGACTGCATCATCTCTGGAAGTGCCTCTCCAACGCTGGCAATCAACACTGTGACTAACAAGGTGGCATTGTACAACCCTGACCAGGACGGGAGTGACAGCCCTCGAAGCAGCCTTAACAATAGCCTATCTGATCAGAGTCTGGCCTCTGTTAATCTCAACAGCGTGGGCAGCGTGCACAGCTACACACCGGTGACGAGTCATCCAGAGCCGGTGTCCCAGTCCATTGGCTTGCAGCAGGCCCCTCAGGCCCAGTACAGCATACCGGACCGCGACAAGCAGCTGCTCTTCTCCGACTTTGAAGATCTCAGTGCCTCCTTCCGCAGCCTTTACAAGACTGTGTTTGAGCAGTCCTACAACCAACAGGGTCTGATGGGTATGCCCTCGGAGTCGTCCCAGCAGACCCACACCTCCTGCTCTTACCAACACTCCCCCAGCAGCACCATCAGCACCCACCCTCACAACAACCAGAACAGCATCACTAACTCTCACCCCAACAACATCCCCAACAGCGGTAGCCAGGTGCCTCTCTCCCACCCCCCTCACTCGGCCCACAACTCGCCCCACGGACAGCACCTCTCCCAGCATGGCCCTCACACCCAGCACAGCCAGCACCCGCACACGGCGCATAGCCAGCACAGCCAACATCCCCAACACAGCCAACATCCCCAGCACAGCCAACACAGCCAGCACGGGCAGCATCCCTCCCAGCACCAGGCCCACGGCCAGCACACGGCGCAGCAACAGCAGCAGCAGCACCAGAATCTCTCCCACCAGCCTCATCCTGCCCAGCAACAGATGCAGTGCAACACCGGTCTTCCCAGTGACTGGTACCCCAACCTGGATGCGCTGAAAGAAAGCTGCCGCATCGCCAGCAGCTACAACTGGGCTGATGTGGATCTGTCACCTTTCCAAGGTTTGAAAGAGAGCATGAGGCAGGCGGAGCTGAATAACTGGTCTCTCGAGCCCACTCAGATGGCAGACCTCTGCTCCTCCATCAATCAGTTCTTTGCTCGCACTGGAATCCAGCCACAGGGGGCAGTGCAGCCTCCGGTGTGCCATGGCTCCATGCATCCAAACAAGCCCAGCCCACACATCAACACAGGAAACATGTACATGGACTCAAGACAGAGCTTGAGTTCTATGATGGGTCCGCCCGGATATCCTCATATGCCGCCCATGAGCAGCGCTGGCCCCACTATGACAGGCCATCACGCTCAGATGAACCAGCAGCATATGATGCCTGCTGGAAACTTCCAGATGCGCCGCATGCCCGCCGACGACATCCAGGACGACTTTGACTGGGACTCCATCGTC

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09403 FOXJ2_3; forkhead box protein J2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU496522 lncRNA downstream 11260 3538502 ~ 3538723 (-) True G432406
TU496489 lncRNA downstream 257244 3290108 ~ 3292739 (-) True CI01000306_03278833_03292888
TU496485 lncRNA downstream 263954 3285736 ~ 3286029 (-) False CI01000306_03278833_03292888
TU496484 lncRNA downstream 265201 3284499 ~ 3284782 (-) True G432370
TU496421 lncRNA downstream 272785 3231511 ~ 3277198 (-) True G432308
TU496527 lncRNA upstream 65000 3672948 ~ 3673510 (-) True G432411
TU496531 lncRNA upstream 72871 3680819 ~ 3681256 (-) True G432415
TU496532 lncRNA upstream 75025 3682973 ~ 3683834 (-) True G432416
TU496564 lncRNA upstream 133559 3741507 ~ 3742163 (-) True G432445
TU496431 lncRNA upstream 136033 3743981 ~ 3747513 (-) True G432318
CI01000306_03520303_03535138.mRNA mRNA downstream 14845 3520112 ~ 3535138 (-) True CI01000306_03520303_03535138
CI01000306_03477332_03500721.mRNA mRNA downstream 49086 3477260 ~ 3500897 (-) True CI01000306_03477332_03500721
CI01000306_03357647_03435533.mRNA mRNA downstream 114450 3357647 ~ 3435533 (-) True CI01000306_03357647_03435533
CI01000306_03334185_03336292.mRNA mRNA downstream 213691 3333832 ~ 3336292 (-) True CI01000306_03334185_03336292
CI01000306_03296768_03330783.mRNA mRNA downstream 219200 3295723 ~ 3330783 (-) True CI01000306_03296768_03330783
CI01000306_03647554_03652331.mRNA mRNA upstream 39606 3647554 ~ 3652331 (-) True CI01000306_03647554_03652331
CI01000306_03655659_03655928.mRNA mRNA upstream 47632 3655580 ~ 3655928 (-) True CI01000306_03655659_03655928
CI01000306_03754616_03760572.mRNA mRNA upstream 146462 3754410 ~ 3760654 (-) True CI01000306_03754616_03760572
CI01000306_03784261_03805127.mRNA mRNA upstream 175657 3783605 ~ 3805127 (-) True CI01000306_03784261_03805127
CI01000306_03814414_03823373.mRNA mRNA upstream 206466 3814414 ~ 3823373 (-) True CI01000306_03814414_03823373
TU496065 other downstream 546092 3000236 ~ 3003891 (-) True G432022
TU495727 other downstream 1801033 1748822 ~ 1748950 (-) True G431728
TU495726 other downstream 1801761 1747526 ~ 1748222 (-) False G431728
TU495821 other downstream 2237549 1311702 ~ 1312434 (-) False G431814
TU495679 other downstream 2386645 1163027 ~ 1163338 (-) True G431706
TU497393 other upstream 934775 4542723 ~ 4545092 (-) True CI01000306_04544349_04545034
TU497685 other upstream 1753695 5361643 ~ 5383763 (-) True G433450
TU497952 other upstream 2433066 6041014 ~ 6041283 (-) True G433670
TU498286 other upstream 2588159 6196107 ~ 6197210 (-) True G433985
TU498319 other upstream 2747232 6355180 ~ 6361643 (-) True G434016

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007946 False 7178 mRNA 0.43 12 NC_007122.7 26228918 ~ 26362334 (-)
bowfin (Amia calva) AMCG00002072 True 1875 mRNA 0.61 11 CM030136.1 2701238 ~ 2727268 (-)