RNA id: TCONS_00007946


Basic Information

Item Value
RNA id TCONS_00007946
length 7178
RNA type mRNA
GC content 0.43
exon number 12
gene id XLOC_004159
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 26228918 ~ 26362334 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAAAGTAGTTCCGGATTTGTGATCCGCGCATTCCCCGGATGTTAGCTATTCAGAGAGAAAGACGAACGAGCGAGAGAGAGGCGGAGAAGCCAGGAGACGCCACGGACAAACCGGTAAAGGGATTGCGGGTCTCAAACCCACGACAAACACGGAGAGTTGAGGCTCATTTCGAGGAGAGAGGGAGCTGTGATCGAAATAAAGGAAGGGGAGGGGGCGGCTAACTTTGACAGACCTGCACTGGCCTCCAGAAGCGGACACGAGCCCGGgtttcatttttgagtgacgcCGACAAAAACAGTGATCTGAGGGAGCCCCTGCGTTCTCGCCGCACCGGATCGTCACCCCTCCTTAGCTGCCACTCGACCTGCCACCATGACGTCGGAGCTGGAGAGCAGCTTGACCTCCATGGACTGGCTGCCGCAGTTGACCATGCGGGCGGCCATTCAGAAAGCGGATGCCCAAAATGCTCACGGACCGGGCATGCCTAAGAAAAGCGCCCTGCTGGATCCCAACACCACACTGGACCAGGAGGAGGTGCAGCAGCACAAGGATGGCAAACCGCCATACAGCTACGCCAGCCTCATCACATTCGCCATCAACAGCTCGCCAAAGAAGAAAATGACACTGAGCGAGATCTACCAGTGGATCTGTGACAATTTCCCCTATTACAGGGAAGCCGGCAGTGGGTGGAAGAACTCAATACGGCACAATCTCTCCTTGAACAAGTGTTTTCTCAAAGTGCCTCGCTCCAAAGATGACCCGGGAAAGGGTTCGTACTGGGCAATTGACACAAATCCAAAGGAGGACACACTGCCCACACGACCCAAGAAGAGGCCACGGTCTGGAGAGCGGGCGTCCACGCCGTACAGCCTGGAGTCGGATAACTTGGGAATGGACTGCATCATCTCTGGAAGTGCCTCTCCAACGCTGGCAATCAACACTGTGACTAACAAGGTGGCATTGTACAACCCTGACCAGGATGGGAGCGACAGCCCTCGAAGCAGCCTTAACAATAGCCTCTCCGACCAGAGTCTGGCCTCTGTTAATCTCAACAGCGTGGGCAGCGTTCACAGCTACACACCGGTGACGAGTCATCCCGAGTCGGTGTCCCAGTCTATGAGTTTGCAGCAGGCCCCCCAGGCCCAGTACAGCATACCAGATCGCGACAAACAGCTGCTCTTCTCTGAATTCGAAGATCTCAGTGCCTCCTTCCGCAGCCTTTACAAGACTGTGTTTGAGCAGTCCTACAACCAACAGAGTCTGATGGGTTTGCCCTCGGAGTCATCCCAGCAGACCCACACCTCCTGCTCCTACCAACACTCCCCCAGCAGCCACCCTCACAACAACCAGAACAGCATCACTAACTCGCACCCCAACAACATCCCCAACAATGGCAGTCAGGTGCCCCTCTCCCACCCGCCCCACTCGGCCCACAACTCGCCACACGGACAGCACCTCTCCCAGCATGGCCCTCACAGCCAACACCCGCACACGGCGCACAGCCAGCACCCGCAGCACAGCCAACATCCCCAGCACAGCCAACACAGCCAGCATGGGCACCAGGCCCACGGGCAGCACACGGCacagcaacaacagcagcagcaccaGAATCTCTCCCACCAGCAACAGATGCAGTGCAATACTGGTCTTCTTAGTGACTGGTACCCCAACCTGGATGCGCTAAAAGAAAGCTGCCGCATCGCATCCAACTGCAACTGGTCTGATGTGGATTTGTCTCCCTTCCAAGGTTTGAAAGAGAGCATGCGACAGGCGGAGATGAATAACTGGTCTCTGGAGCCCACTCAGATGGCAGACCTCTGCTCTTCTATCAATCAGTTCTTTGCTCAGACTGGAATCCAGCCACAAGGGGCAGTGCAGGCGTCGGTGTGCCATGGCTCCATGCATCCCAACAAGGCCAGCCCACACATCAACAGAGGAAACGTGTACATGGACTCGAGACCGAGCTTGAGTTCGTTGATGGGTCCTCCAGGATACACTCATATGCCGCCCATGAGCAGCGCTGGACCCACTATGACAGGCCATCATCCTCAGATGAGCCAGCAGCACATGATGACCGGCGGTAACTTCCAGATGCGCCGCATGCCTGCCGACGACATCCAGGACGACTTCGACTGGGACTCTATTGTCTAACCCAGTCGCCGAACGCATAGAGTGTTGCAGAAAAAAACGAGAGAGGAGCGAATGGAGGCAGAGTGTTTGTGTTACAGAGCAAAGAGGGCTGGACCTGAGGTGTCTGCACGCCCCTGGCAGAAAGCAGATCAGAACGGGACACTTGAAAAAAATAAGTGCTGGTGTTGTTCATTATGACCTGAAAGAGACTCCTGTGTTCCTGGTgtttttatcaaacaaaacaaaacaaaaacaaaaaagatattACTTTGAAGACAATCACATTTACTAGGACATGTTTAAGTGATCGCTTTTATACTTGTCCAAGAGGCAAGTGGTTCATGTTTATGTCAAAATGTCTCCCAACCCACAGCCTCTCTGCAAGCCCGCTCAATTTGCCAAGCTCACCCCTGCTCTTCAACTGTcgttctgtgatttttttttttttttttcccgagtGACTCGTCTGGTTGTTCTCCCTCTTGTGGTGACTAACTCAGGCCAGACGGGATTGGCTCCCTCATGTGTGTTGTGAAACTTCCTCTGAGATGCAGGGCGCTTTTCAAAAGAGGGCCGACGGTGCAGGTAAAACGTCACTCCTGACGCACCTCCAGTTCATTCTTGTCATTCAGGCACAAATGTCCTctttctattttttgttttaatgctcCTCCTCTGACCCTACACACTGTAATATGTCGCCATGCATTTAATTCTAGCAAAATCTAAAGGAAATTTAGCAAAACCACATTACCTACAGTATTTGTACTTGTGTATCCTTGCCGTCTAACGTGTGTCATGTTCTTTTGTCACTAATAGTCTGAACGTGTGCGTCAGAAAACGAGACCTTACTATTGTCGTTCCTCATCGCTCGTACAATCCTCATCCACCTGTAGTTCCCCCAATCAGACCGCGTCGCTTTTAAAGCCCTCAGGACCCGCCGCTGAAAATTTCACACACGTAGTTTACGAGATTTGTGGGATACCGGAGAGGCCTGCGAAAATCAGCATGCTGTGTGGCTCTTTACAGCAGCGTTGAGGAGGAGATGAAAATCACGTCAAGGCACATTTGCTTAATGGTCCGCAATAAAAGAGCCCTCTTTATTTTAACCCAAGGACCAACCGACATGAATTCCCTCGCTCTTTGCTGCACTgacaaggactttttttttttttgtttttgcaaaaagCGAAGGTGCTGTTGATCTGTGTAAAGTAATACTGCAGGTAAGGAGCAGGCTCAATTATTTCGATACACTAATAGCCTTATTTTGGAGGAATGTTCATTAAAATTCTACTACAAAGACGTCATgtgagtttaaaataaaaaaaaaacttgaggctTTTGCAGGCTTTTGAAATGCTCTGCTAACTTAAACCACAGTGTCATTTTATTATATCAGTGATATTATGGAGTATTTGtgcaatattgttttatttattttatttagggcTATTAGTGATTACAATCATCTCTTTTGAAGAGCACAAAACTAATGCACAAGATCTGGACTAGAATAGCAGAACCCAAATTAGAAATAGAGGCAGGCTTTTGACCTTTAGCAGGGTATTTATCTGAGAGCAGCAGCACGTCAATTGGAGTGCAGTGCTGATTTGGAAAAGCCATAAAGTGCGGTTGAAAAGGGAAGAAGTGGATTTGTTTCTCATCGCTTCAACGTTTACGCACCCTTTCAGTAGTTTGCAGTCATCTTTATTTGTTGATCGTGTTTAAGTGCAAATAGACTTGGAAAGTGATTTGATGACAATCGTTTTTGTTTCAGTATTACGAACTCTTCAAGTATTTACACTAGTCATTGACATGTTTTGGTTTTTGATTGTTTCGTAATGGATCATGAACCCTACCTTCAGGGGTTCctcataaatgtttaataatcatGAAAACTTGTCTTATTTCAAGCTTaaaatttaaagacaaaattattgttTCGCTATTTTTAGGACCATTAAGATTGGGagttgaaatttatattttaattagacaggggtgacacggtggttTAAGGTTGCTctttcgagtctcagctgggtcagttggcatttctgtgtggagtttgcattttctcactgtgttcaagtgggtttcctctcggtgctctggtttcccctacagtccaaggcatgcgctataggtgaattgaataaactaaattggccgtagtgtgtgagagtgtatggatatttcccagtacagggttacagctggaagggcatctgctgtataaaacatatgctggataagttggcggttcattccactgtggcgacccctgattaatagaggaACTAAGTCTaagaaatatgaatgaatgaatgaatgaattttactgAGACACTATTATTGTcaaagaacacacacactctcattatTGTAATATGTTCagatattttactatttttttctgagtttattttttgttgttgaaatgattctcattttttgtttattgtattgtaagtattttaagtaataaaaaatgAGAATTTGATTATAAAGGCAGTACTGAAATTCAAATTTAGTTGTTTTACAAGTTAAGAAGCTATGAgtcaataatgaaaatgttttcaaatcaaactgcataaaatgtaattaaaggtAATAATTGCTTATATAGCAAAAATGTTATAATCATTAAATCACATTAGAAGACTTCTTTTTAAAGGATCACAAGTCCAGCCCCACAATACTtgtttaaatcatatttaaataaactttttcctTCAAACagctttttaatacatttgtcaGCAAGAAacttttaatcaattaaaatttaataaaactgaatatgatCACTTATTTGTATAATTAGTCAtagtatttgatttgatttttgctTAAATATATGTTGTGCTGAATGGCAATGCAACATTGAGTACgttcacatggacaccaataataagattttaatatgattaagacaatactctgattaagagtctaccatgtaaacagtgatttttgaacAATTTAATCTGATTagggtcataatcgaactaaacagaaatcggattAAGACATTAAGAATTTCctgattttagttgcattattaagtgcagtacagacatataaacaccgcaatcaaactattactgtagTGAAGGATTTTCtacgcattttgtgacaggataatcTATACACACacgactgtttgacactattctctgcacctactgagtcagtgaaggacAACAGACATACACAGTgaaattattttgatattttatttttacaaatgataTTTGAAACATGAAAGTGAACAATTCACTTGCACTTAATATTTTCCTCTATGAATATGAAAACACTTTTGCATCAAAATAGAATGTGTTGCCTTAACAGattaagaaaaaaactttaatgGTCTTCTAAATTGGTTTcttgggacaaaaaaaaaatatctttttattttgaggtGAAATATGACAAGTTTTGAGGGATTCTTCCTCAATGTACGGTTAAGAAATCCAGTTGTTCATGACATTTCATTCTGATTCTTCTCTGAATCCTGTCCACCATCAGTTCCTCAGTTTTTCCACAATCCCATGTAATCCATCATTACATAACAATTGTCATATCCTCTGATGCTGCTGATGGGCTTTAAATTGGCAAAACCGTATTACACAAGCCTAACACAACCCAGGAATCCAACTCAATTGGCCATGATGCTGAATTATACAAGAGAGGAGAACCCaagactgtctgtgtgtgtgtgtgtttttgttttgtttctcagCACATTGTTCTTAAGCTAAGCTCCATTGCCCAAATCTGCTTTGGCTCCTTGCATCCTTTCTTCTTTTCCATCCGTTGTTtcatctgttgtttttttttcttttctttggaagCTGTTAAACTATTCGCCTCAGTGTTTGTCTAACAAAGAGCTTTTTTATCTGGTCATCATGTGTGCACTTTCGAGAAGAATTCAGAAGCACAAGCACTCGCGTGGTTCATGAACGTCTGCCATCGAACTTTACCTTAAGCATACTGTGGTGTTCGCCCTCGATCACGGTTTAGTCTGGATGTCGACCACTGAAGGAGCGTCCGTTTTGAGTTGGAGCTATTTCGTATGTATTGCCAATCTATTCGTGGTAGTGATGTGTTTGGATCTCTTGTTTGCCAAAGAGAGACGGTTTGATTTGGGGCAGCGGGTAAATTGTCAAGTAAGTCTGAAAGGATCGGACCGAACAGAAAGCTTCAAAGGGGAGAAAATATGAGCTGGACAGGTGATGAGTTCTCTCTCGATCTCTCTTTTTCCTCAAAAAAGACAAGGAAAAACATTGCTCCTTtgattttttgtgtttgtgttgtgtgaacTGTTTAAAGACGACGCCGTTTttcgtaaaacaaaaaaaaaaaaagaaaaaaaaagaagtaaaaacaaaTGGAGACGCGTCTGCCAGAGAGATTACTGTAATCAAGGAAGATTTGAGAAGCCTTGTTACATTTATGGGAGAAAACTGCCAACACGTTCTGGTATTTGGAGCCTATTTTATTCATTGTTGGTGTGTTGTTGTGCTTGTAAATATGTGTCTTTTCGATTGTCCTTTTTTCCTCCGGGGTGGCGAGGGATCAAGGCAAGGGCTCGGGTTCACCTGCGAAAGAAAAGAGGGAGATGAATACAGAGTATTTTGTTATTGTCCAATCCAAGGGTGACACagtatgtatatatctatattgTATATATGTGATGAAAATGCGTTGGCTTTTTGTGTGACACTACCTTTTACCTGTACTATGGTTCAACATTCAGTGTTTCAGTGTTTATATTCTAttttaatctttgttttgattttgtccTGGTCATTACTTGTATTTGTTGTTTCCTTTGTTTTCTCCTTTTTGTCCTTTTTCGTTATTGCACGGTTTATTACTTTTGCTGTCCAATAAGATGACACGGCTTCTCTTTGTATTGGTTTTAGTGCTGTAAAATAACTCTGAAGTGTCATTAGGATTGTCAATACCACCCTTCCCCCGATATGCATGAATGGcacttaaagaaataaaatatgttaaCTTCACTGTGGAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101005-1 Predicted to enable DNA-binding transcription factor activity and sequence-specific DNA binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human FOXJ3 (forkhead box J3).

Ensembl:

ensembl_id ENSDART00000115037

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008798 lncRNA downstream 751938 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00007926 lncRNA downstream 751938 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00008797 lncRNA downstream 752336 25475305 ~ 25476582 (-) False XLOC_004150
TCONS_00007924 lncRNA downstream 815765 25412343 ~ 25413153 (-) True XLOC_004148
TCONS_00007921 lncRNA downstream 820022 25368112 ~ 25408896 (-) False XLOC_004147
TCONS_00008799 lncRNA upstream 257100 26619434 ~ 26666495 (-) False XLOC_004162
TCONS_00007965 lncRNA upstream 1139871 27502205 ~ 27507973 (-) False XLOC_004167
TCONS_00007962 lncRNA upstream 1140175 27502509 ~ 27503132 (-) False XLOC_004167
TCONS_00008800 lncRNA upstream 1181244 27543578 ~ 27625465 (-) False XLOC_004169
TCONS_00007969 lncRNA upstream 1230309 27592643 ~ 27625125 (-) False XLOC_004169
TCONS_00007944 mRNA downstream 11408 26189703 ~ 26217510 (-) False XLOC_004158
TCONS_00007945 mRNA downstream 21780 26191291 ~ 26207138 (-) True XLOC_004158
TCONS_00007942 mRNA downstream 48204 25882617 ~ 26180714 (-) False XLOC_004157
TCONS_00007941 mRNA downstream 188324 25882617 ~ 26040594 (-) False XLOC_004157
TCONS_00007939 mRNA downstream 375706 25833219 ~ 25853212 (-) True XLOC_004156
TCONS_00007949 mRNA upstream 8047 26370381 ~ 26375575 (-) False XLOC_004160
TCONS_00007951 mRNA upstream 206158 26568492 ~ 26590401 (-) False XLOC_004161
TCONS_00007952 mRNA upstream 206498 26568832 ~ 26576754 (-) False XLOC_004161
TCONS_00007953 mRNA upstream 206513 26568847 ~ 26590429 (-) False XLOC_004161
TCONS_00007955 mRNA upstream 256799 26619133 ~ 26666627 (-) False XLOC_004162
TCONS_00007943 other downstream 48204 26020099 ~ 26180714 (-) True XLOC_004157
TCONS_00007940 other downstream 297836 25857941 ~ 25931082 (-) False XLOC_004157
TCONS_00007931 other downstream 558963 25669839 ~ 25669955 (-) True XLOC_004152
TCONS_00007928 other downstream 696438 25528557 ~ 25532480 (-) False XLOC_004151
TCONS_00007927 other downstream 752733 25476099 ~ 25476185 (-) True XLOC_004150
TCONS_00007950 other upstream 11664 26373998 ~ 26375518 (-) True XLOC_004160
TCONS_00007954 other upstream 207197 26569531 ~ 26577209 (-) True XLOC_004161
TCONS_00007960 other upstream 385958 26748292 ~ 26748429 (-) True XLOC_004165
TCONS_00007963 other upstream 1140683 27503017 ~ 27503132 (-) False XLOC_004167
TCONS_00007964 other upstream 1140898 27503232 ~ 27503320 (-) True XLOC_004167

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_03549983_03607948.mRNA True 1836 mRNA 0.58 11 CI01000306 3549983 ~ 3607948 (-)