RNA id: TCONS_00007942


Basic Information

Item Value
RNA id TCONS_00007942
length 2460
RNA type mRNA
GC content 0.52
exon number 10
gene id XLOC_004157
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25857941 ~ 26180714 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaaaaaaaatctgctccctGCAGCAGCGCTTCAACTCGACGATCGGTTTCATaagaagcgagagagagagagagagcaagcatTGAAAGGGAGGGGTAAAGCCGAGGCAGAGGGAGGAGAGAAGAGGGCACACGCACAACAAACGCCAGTCCAACCCTGAGCCCGCGGGAATCCAGCGCTTCTCCCTCCGTCAGCAGGACAGCAGAAAACCTGTCTCAGTCTGGAGAAACCTGCCAACCTCAACACATGATCACAGAGCAGCGGCAGAAGGCAAGACATCATTGCTCTGATTCTCTCTCAGTCATtctccttacacacacacacacacgcacacacacacacgcactctcaTTATCTTACATGAAGCTATTTCTCTCCGTCCTGAGCTCAAACCTCTGTGCTATTCTTACACAGCTGCAACGTTGCTCCAGCTGCTGCTTTCCCAAAAAGACGAACCGCTGCTCTTCTGCGTGGCATTTAGAGACTGACCTGGGACATCCCCCAAACCATGGAGGACACTCTCACCTGCACCCCTACCACCTTTTCCCAAGTCTTCGGCCGCCAAGGACAGTTGATGCAAGCTACTGTGCAATCTCTGAACAGCCTGAACGACCAAATCGCACACTTCATGGTGAACAGACCCAACGCTATGAGTCATGAAGAGGACACCTTTCTGCCCACCGAGAGGGACACTTTGAACCAATCCATGGCTCTAATGAGACACCTGCTCATGGATGCACAGGGCAAAATCCTGAAAATGATGGAGGACAACAAGCAGCTGGCTCAGCGGATCGATGGGGCCATCCAGTCGGCCAGTCAGGAGGTGACCAACCTGCGCTCCGAGCTGTCCGCCACCAGCCGCAGATTGGCCGAGTTGGGGGCGTGCAACCCCATCGGCCTGGAGAACAACCAGCAAaaccaccatcaccaccaccatcaccaccacctCCACGATCCGTCAGTCCACCACCGGCAGAAGACAGTGGTTTCTGATCTCACTTTCCAAACAGGCATGTCCAGCTTGATGGACTTCGGGACTCCAGATTCTACACTCGACAAAGtgtTGCTGAGGGAGGAGGTGGCGCAGTTACAGGAGGAGGTGCATCTCCTGCGGCAGATGAAGGACATGTTGAGTAAAGATCTGGAGGATTCTCACGGCGGCTGTTCGGCCGATACGCTCTCCGCCGCTGAGCTCAAGGTGCAGCTGGGGGAGAAGGAGCAGGAGCTGGAACGTGCCAAGGAGGCCTTACAAGctaTGAAGGGTGACCGGAAGCGGTTGAAGGCAGAGAAAGCAGACCTGGTAAACCAGATGCAGCAGCTTTATACCACACTGGAAAGCAGAGAAGAGCAGCTCAGAGACTTTATCAGAAACTATGACCAGCACAGAAAGGAGAGCGAGGACGCGGTGAAGGCTCTGGCTAAAGAGAAGGACATGCTGGAGCGAGAAAAATGGGACCTGCGCCGGCAGACCAAAGAGGCCACAGAACAGGCCACTGTCCTGCGCTCACAGATCGACATGAAGGAGAACAGAGTCAAAGAGCTGGAGGCCGAGCTCACTATGGCGAAGCAGTCTCTGGCCACCCTCACTAAAGACGTGCCAAAGCGTCACTCTCTGGCAATGCCATCAGAGCCAGTGGTCAACGGCAGTCAGGAGTGGGTGATGCAGGCAGACCTTCCTCTCACTGCAGCCATCAGACAGAGCCAACAGACCCTGTACCACTCGCATCCCGCAGACAGGCAAGCTGCTTTGAGGATCAGCCCCTGTCACTCGCGTCAGCCCTCCATCATCTCGGACGCTTCGGCTGCTGACGGCGACCGCTCGTCCACCCCGAGCGACATCAACTCGCCCCGCCACAGGACTCACTCTCTCTGCAATTCCATGGAGGACCTCGAGGACCAGAAGCGtaagaagaagaaggagaagaTGAGTCTCGGCTCACTTTCTCGAGTGTTTGCCCGGGGAAAATCTCAGCGCAAGTCCTTGGATCCGGGCCTGTTTGATGGTACTTCCACCCCTGATTACTATATAGAGGAGGATGCTGACTGGTGATAATGCTATGGTGTGAGCGTttagctatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtggacGTATGCCTGAAAATGTATGAGTtaaagtgtgtgagtgtgcacaAGCGTTTGTGTGTGCCTTCAAATGTAATCCCAGTGAAAATACAGGAAAGAGGAAGAACTGCTGCCTCCTTGAAATGTACATAACGACACTTAAAAGAAACATCtatgtaaatgaaatatatatttatatatgtatgcatatgtacatatgtttacattcatataaatatatacatgggATCATTTGCGTGTGAATATGTTTATGCTGTTATAATAATGCTTTATTTGTGGTAATATATGTCTCTTTTTTTATAAACTGGAAACTTGAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061215-31 Orthologous to human KAZN (kazrin, periplakin interacting protein).

Ensembl:

ensembl_id ENSDART00000173597

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008798 lncRNA downstream 405637 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00007926 lncRNA downstream 405637 25475305 ~ 25476980 (-) False XLOC_004150
TCONS_00008797 lncRNA downstream 406035 25475305 ~ 25476582 (-) False XLOC_004150
TCONS_00007924 lncRNA downstream 469464 25412343 ~ 25413153 (-) True XLOC_004148
TCONS_00007921 lncRNA downstream 473721 25368112 ~ 25408896 (-) False XLOC_004147
TCONS_00008799 lncRNA upstream 438720 26619434 ~ 26666495 (-) False XLOC_004162
TCONS_00007965 lncRNA upstream 1321491 27502205 ~ 27507973 (-) False XLOC_004167
TCONS_00007962 lncRNA upstream 1321795 27502509 ~ 27503132 (-) False XLOC_004167
TCONS_00008800 lncRNA upstream 1362864 27543578 ~ 27625465 (-) False XLOC_004169
TCONS_00007969 lncRNA upstream 1411929 27592643 ~ 27625125 (-) False XLOC_004169
TCONS_00007939 mRNA downstream 29405 25833219 ~ 25853212 (-) True XLOC_004156
TCONS_00007937 mRNA downstream 52905 25782721 ~ 25829712 (-) False XLOC_004155
TCONS_00007938 mRNA downstream 53611 25814441 ~ 25829006 (-) True XLOC_004155
TCONS_00007935 mRNA downstream 105299 25752198 ~ 25777318 (-) False XLOC_004154
TCONS_00007944 mRNA upstream 8989 26189703 ~ 26217510 (-) False XLOC_004158
TCONS_00007945 mRNA upstream 10577 26191291 ~ 26207138 (-) True XLOC_004158
TCONS_00007946 mRNA upstream 48204 26228918 ~ 26362334 (-) False XLOC_004159
TCONS_00007947 mRNA upstream 51432 26232146 ~ 26362294 (-) False XLOC_004159
TCONS_00007949 mRNA upstream 189667 26370381 ~ 26375575 (-) False XLOC_004160
TCONS_00007931 other downstream 212662 25669839 ~ 25669955 (-) True XLOC_004152
TCONS_00007928 other downstream 350137 25528557 ~ 25532480 (-) False XLOC_004151
TCONS_00007927 other downstream 406432 25476099 ~ 25476185 (-) True XLOC_004150
TCONS_00007916 other downstream 677374 25205153 ~ 25205243 (-) True XLOC_004144
TCONS_00007913 other downstream 914730 24967771 ~ 24967887 (-) True XLOC_004142
TCONS_00007948 other upstream 53013 26233727 ~ 26237953 (-) True XLOC_004159
TCONS_00007950 other upstream 193284 26373998 ~ 26375518 (-) True XLOC_004160
TCONS_00007954 other upstream 388817 26569531 ~ 26577209 (-) True XLOC_004161
TCONS_00007960 other upstream 567578 26748292 ~ 26748429 (-) True XLOC_004165
TCONS_00007963 other upstream 1322303 27503017 ~ 27503132 (-) False XLOC_004167

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_03357647_03435533.mRNA True 1284 mRNA 0.57 8 CI01000306 3357647 ~ 3435533 (-)