RNA id: TU503190


Basic Information

Item Value
RNA id TU503190
length 627
lncRNA type intronic
GC content 0.45
exon number 2
gene id G438423
representative True

Chromosome Information

Item Value
chromosome id CI01000308
NCBI id null
chromosome length 1982671
location 927666 ~ 931002 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAGAGTGTATTAGTCAGGCAGCAGTGTTTTAAGACTATATGAGTGTGTCCATGAGCATTGGGATCATTCAGTGTGTGTACGCACTAACTGTGGCTTCCTGGCACGAGGTCTCATTCTCACTGCGATGATTGTTCTGGCATGTCTCCTTAAAGCAGACAGATATGTCATAACTGAACATTTCAGAAAGAGAGAGAGGAAGAGAGGCTGAATTCAACAGGCCTGTCAACACGACTCAATCTAACTCAGACGGCACGCCCACAGACCGTTCACCAACCGTCTGATGCATATTATGCACAAAACTGTCTCGATCTGGCAAACCTAATCTGATTGGCTGGCTTAACGCAACTTCCAAGAGAAATGACGCACTGGGTTTTATCTGTCCGACTGGAAACAAAGTCTTTGTTTACAAGGTACTGGGTTGATAAAACAAGCACTACTGAGGATGAAATAATTAGTGGAATTGTCAGCCAGGACACCACACGTGTGCCAGCCAGCCGGCGACATTGAAACAGAGACACCGTGTATGTGTGAAAGAGAGGAACAAAGACTCAGCAGATGGAGAGACAAACAGGAGAAGTGGAAAGATACAGAGAACACAAACGGATGATCTGACAGTAGAAAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU503113 lncRNA downstream 93229 834171 ~ 834437 (-) True G438352
TU503139 lncRNA downstream 99582 827737 ~ 828084 (-) True G438377
TU503066 lncRNA downstream 110373 811455 ~ 817293 (-) True G438309
TU503117 lncRNA downstream 141365 768982 ~ 786301 (-) True G438355
TU503105 lncRNA downstream 179929 747522 ~ 747737 (-) True G438344
TU503201 lncRNA upstream 11126 942128 ~ 944000 (-) True G438432
TU503205 lncRNA upstream 18188 949190 ~ 957849 (-) True G438434
TU503229 lncRNA upstream 243562 1174564 ~ 1178142 (-) False CI01000308_01176051_01177873
TU503228 lncRNA upstream 243775 1174777 ~ 1177876 (-) True CI01000308_01176051_01177873
TU503237 lncRNA upstream 309369 1240371 ~ 1241381 (-) True G438460
CI01000308_00750618_00755764.mRNA mRNA downstream 171186 749787 ~ 756480 (-) True CI01000308_00750618_00755764
CI01000308_00711286_00720426.mRNA mRNA downstream 206954 711216 ~ 720712 (-) True CI01000308_00711286_00720426
CI01000308_00529728_00530015.mRNA mRNA downstream 397521 529618 ~ 530145 (-) True CI01000308_00529728_00530015
CI01000308_00474123_00482394.mRNA mRNA downstream 444202 474064 ~ 483464 (-) True CI01000308_00474123_00482394
CI01000308_00110535_00111604.mRNA mRNA downstream 816008 109601 ~ 111658 (-) True CI01000308_00110535_00111604
CI01000308_01027964_01028971.mRNA mRNA upstream 94843 1025845 ~ 1028971 (-) True CI01000308_01027964_01028971
CI01000308_01060962_01079388.mRNA mRNA upstream 129877 1060879 ~ 1079388 (-) True CI01000308_01060962_01079388
CI01000308_01085455_01103053.mRNA mRNA upstream 153945 1084947 ~ 1104480 (-) True CI01000308_01085455_01103053
CI01000308_01110508_01122419.mRNA mRNA upstream 179469 1110471 ~ 1122932 (-) True CI01000308_01110508_01122419
CI01000308_01138943_01149474.mRNA mRNA upstream 207580 1138582 ~ 1149735 (-) True CI01000308_01138943_01149474
TU502303 other downstream 791981 135308 ~ 135685 (-) True G437635
TU503204 other upstream 16554 947556 ~ 953628 (-) False G438434
TU503464 other upstream 846593 1777595 ~ 1782581 (-) True G438671

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018902 True 1076 lncRNA 0.49 7 NC_007126.7 12060989 ~ 12357009 (+)