Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00019876 |
| length | 614 |
| lncRNA type | retained_intron |
| GC content | 0.45 |
| exon number | 4 |
| gene id | XLOC_009980 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 27564270 ~ 27581488 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0003341 | cilium movement | biological_process |
| GO:0007369 | gastrulation | biological_process |
| GO:0060271 | cilium assembly | biological_process |
| GO:0010826 | negative regulation of centrosome duplication | biological_process |
| GO:0060027 | convergent extension involved in gastrulation | biological_process |
| GO:0060028 | convergent extension involved in axis elongation | biological_process |
| GO:0036038 | MKS complex | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| id | description |
|---|---|
| ko03036 | Chromosome and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-080716-1 | Acts upstream of or within cilium assembly; cilium movement; and convergent extension. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of MKS complex. Predicted to be active in ciliary transition zone. Used to study ciliopathy and meningocele. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome (multiple); COACH syndrome; Joubert syndrome 6; Meckel syndrome 3; and nephronophthisis 11. Orthologous to human TMEM67 (transmembrane protein 67). |
| ensembl_id | ENSDART00000144875 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00021947 | lncRNA | upstream | 13048 | 27543308 ~ 27556789 (+) | False | XLOC_009979 |
| TCONS_00021948 | lncRNA | upstream | 13048 | 27543497 ~ 27556789 (+) | False | XLOC_009979 |
| TCONS_00021949 | lncRNA | upstream | 13048 | 27543582 ~ 27556789 (+) | False | XLOC_009979 |
| TCONS_00021950 | lncRNA | upstream | 13048 | 27543588 ~ 27556789 (+) | False | XLOC_009979 |
| TCONS_00021951 | lncRNA | upstream | 13048 | 27547495 ~ 27556789 (+) | False | XLOC_009979 |
| TCONS_00021720 | lncRNA | downstream | 268576 | 27839927 ~ 27873367 (+) | True | XLOC_009984 |
| TCONS_00021952 | lncRNA | downstream | 478203 | 28049554 ~ 28050028 (+) | True | XLOC_009986 |
| TCONS_00021953 | lncRNA | downstream | 698664 | 28270015 ~ 28271395 (+) | False | XLOC_009987 |
| TCONS_00021954 | lncRNA | downstream | 1089044 | 28660395 ~ 28667333 (+) | False | XLOC_009994 |
| TCONS_00021955 | lncRNA | downstream | 1089052 | 28660403 ~ 28663860 (+) | True | XLOC_009994 |
| TCONS_00019868 | mRNA | upstream | 10941 | 27543545 ~ 27558896 (+) | False | XLOC_009979 |
| TCONS_00019871 | mRNA | upstream | 11264 | 27543893 ~ 27558573 (+) | False | XLOC_009979 |
| TCONS_00019864 | mRNA | upstream | 67135 | 27442549 ~ 27502702 (+) | False | XLOC_009978 |
| TCONS_00019865 | mRNA | upstream | 67356 | 27444098 ~ 27502481 (+) | True | XLOC_009978 |
| TCONS_00019861 | mRNA | upstream | 164377 | 27383717 ~ 27405460 (+) | False | XLOC_009976 |
| TCONS_00019877 | mRNA | downstream | 22347 | 27593698 ~ 27602512 (+) | True | XLOC_009981 |
| TCONS_00019878 | mRNA | downstream | 32388 | 27603739 ~ 27609172 (+) | False | XLOC_009982 |
| TCONS_00019879 | mRNA | downstream | 32397 | 27603748 ~ 27609172 (+) | True | XLOC_009982 |
| TCONS_00019880 | mRNA | downstream | 43638 | 27614989 ~ 27622183 (+) | True | XLOC_009983 |
| TCONS_00019881 | mRNA | downstream | 386457 | 27957808 ~ 27998856 (+) | True | XLOC_009985 |
| TCONS_00019873 | other | upstream | 14597 | 27549842 ~ 27555240 (+) | False | XLOC_009979 |
| TCONS_00019866 | other | upstream | 14701 | 27543308 ~ 27555136 (+) | False | XLOC_009979 |
| TCONS_00019869 | other | upstream | 14735 | 27543582 ~ 27555102 (+) | False | XLOC_009979 |
| TCONS_00019867 | other | upstream | 14788 | 27543497 ~ 27555049 (+) | False | XLOC_009979 |
| TCONS_00019870 | other | upstream | 19481 | 27543588 ~ 27550356 (+) | False | XLOC_009979 |
| TCONS_00019885 | other | downstream | 816695 | 28388046 ~ 28388163 (+) | True | XLOC_009989 |
| TCONS_00019905 | other | downstream | 1445585 | 29016936 ~ 29019138 (+) | True | XLOC_010002 |
| TCONS_00019912 | other | downstream | 1644923 | 29216274 ~ 29216360 (+) | True | XLOC_010005 |
| TCONS_00019938 | other | downstream | 2431401 | 30002752 ~ 30036693 (+) | False | XLOC_010020 |
| TCONS_00019939 | other | downstream | 2509192 | 30080543 ~ 30080661 (+) | True | XLOC_010021 |
