RNA id: TU512035


Basic Information

Item Value
RNA id TU512035
length 303
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G446071
representative True

Chromosome Information

Item Value
chromosome id CI01000314
NCBI id null
chromosome length 1736912
location 1067212 ~ 1067514 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATAAAAGGTAGAGTATATGCTGTTTGAAGAATCAAGTTGATTTATGTTCACTTTCAGTTCTCATCTGTTTTTAGGGCAGGACTGATTGTAATTATTTTGACTGTTTTAGTATGTATGGTTCATTTAGAAGGAAGCGTGAGTCTGAAAACGTCTATAGGCAGGAAGCTCTTAATGTCTATGTTTGTCTATAAACTGTAGCATAGACTGGTTTCATCCGCACTGGAACAGGGTGTTCCCAGCATAAGAACTTACAGACCACATGATCATGATGCTGCCATGAATTCCAGTGTCAAAAGTCCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU512020 lncRNA upstream 18753 1048022 ~ 1048459 (+) True G446056
TU511977 lncRNA upstream 107871 959130 ~ 959341 (+) True G446018
TU511976 lncRNA upstream 111517 955458 ~ 955695 (+) True G446017
TU511972 lncRNA upstream 122326 944663 ~ 944886 (+) True G446013
TU511969 lncRNA upstream 125639 941350 ~ 941573 (+) True G446010
TU512054 lncRNA downstream 131376 1198890 ~ 1199211 (+) True G446087
TU512055 lncRNA downstream 131787 1199301 ~ 1199808 (+) True G446088
TU512056 lncRNA downstream 132684 1200198 ~ 1200669 (+) True G446089
TU512151 lncRNA downstream 135946 1203460 ~ 1203691 (+) True G446166
TU512153 lncRNA downstream 136809 1204323 ~ 1274031 (+) True G446168
CI01000314_01059252_01065169.mRNA mRNA upstream 1405 1059252 ~ 1065807 (+) True CI01000314_01059252_01065169
CI01000314_00753601_00757013.mRNA mRNA upstream 309960 753513 ~ 757252 (+) True CI01000314_00753601_00757013
CI01000314_00668853_00684135.mRNA mRNA upstream 382807 666915 ~ 684405 (+) True CI01000314_00668853_00684135
CI01000314_00603636_00621698.mRNA mRNA upstream 445514 603636 ~ 621698 (+) True CI01000314_00603636_00621698
CI01000314_00447606_00452346.mRNA mRNA upstream 614851 447464 ~ 452361 (+) True CI01000314_00447606_00452346
CI01000314_01096672_01145574.mRNA mRNA downstream 29158 1096672 ~ 1145596 (+) True CI01000314_01096672_01145574
CI01000314_01238763_01250499.mRNA mRNA downstream 171107 1238621 ~ 1251081 (+) True CI01000314_01238763_01250499
CI01000314_01334065_01347608.mRNA mRNA downstream 266551 1334065 ~ 1348310 (+) True CI01000314_01334065_01347608
CI01000314_01398459_01474471.mRNA mRNA downstream 330945 1398459 ~ 1474471 (+) True CI01000314_01398459_01474471
CI01000314_01635113_01658762.mRNA mRNA downstream 567599 1635113 ~ 1658762 (+) True CI01000314_01635113_01658762
TU511312 other upstream 754191 311532 ~ 313021 (+) True G445422

Expression Profile