RNA id: TU512054


Basic Information

Item Value
RNA id TU512054
length 322
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G446087
representative True

Chromosome Information

Item Value
chromosome id CI01000314
NCBI id null
chromosome length 1736912
location 1198890 ~ 1199211 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTTCACTGGAAGCAGCGCCGGCGACTGTGGCATAATAAAAGTTCCGCTGCTCGTAAGGAGTGTGTTGCGCAATCGCTCCAGCGGCCTCGTTCAGCTCCCACAACACTCGGCCCTGCTCTGCTTCATACTACAGTAACGTTAATGATCGCATCCATGAACATGATTTCTTCCCGAGTCCTATCCCTATTCTTTTGCACCGTCTGTTGAGGTGAAAACCACATGTCCCAAAATTCCGCACTCAAACTTGGCGTCATCAAGCTACGCCTTTGTTTTGAATAGGCCTCTAGCAACCTCTAGAGGACAACATTTTTACATATTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU512035 lncRNA upstream 131376 1067212 ~ 1067514 (+) True G446071
TU512020 lncRNA upstream 150431 1048022 ~ 1048459 (+) True G446056
TU511977 lncRNA upstream 239549 959130 ~ 959341 (+) True G446018
TU511976 lncRNA upstream 243195 955458 ~ 955695 (+) True G446017
TU511972 lncRNA upstream 254004 944663 ~ 944886 (+) True G446013
TU512055 lncRNA downstream 90 1199301 ~ 1199808 (+) True G446088
TU512056 lncRNA downstream 987 1200198 ~ 1200669 (+) True G446089
TU512151 lncRNA downstream 4249 1203460 ~ 1203691 (+) True G446166
TU512153 lncRNA downstream 5112 1204323 ~ 1274031 (+) True G446168
TU512158 lncRNA downstream 7582 1206793 ~ 1283208 (+) False G446170
CI01000314_01096672_01145574.mRNA mRNA upstream 53294 1096672 ~ 1145596 (+) True CI01000314_01096672_01145574
CI01000314_01059252_01065169.mRNA mRNA upstream 133083 1059252 ~ 1065807 (+) True CI01000314_01059252_01065169
CI01000314_00753601_00757013.mRNA mRNA upstream 441638 753513 ~ 757252 (+) True CI01000314_00753601_00757013
CI01000314_00668853_00684135.mRNA mRNA upstream 514485 666915 ~ 684405 (+) True CI01000314_00668853_00684135
CI01000314_00603636_00621698.mRNA mRNA upstream 577192 603636 ~ 621698 (+) True CI01000314_00603636_00621698
CI01000314_01238763_01250499.mRNA mRNA downstream 39410 1238621 ~ 1251081 (+) True CI01000314_01238763_01250499
CI01000314_01334065_01347608.mRNA mRNA downstream 134854 1334065 ~ 1348310 (+) True CI01000314_01334065_01347608
CI01000314_01398459_01474471.mRNA mRNA downstream 199248 1398459 ~ 1474471 (+) True CI01000314_01398459_01474471
CI01000314_01635113_01658762.mRNA mRNA downstream 435902 1635113 ~ 1658762 (+) True CI01000314_01635113_01658762
CI01000314_01695225_01696495.mRNA mRNA downstream 496014 1695225 ~ 1696499 (+) True CI01000314_01695225_01696495
TU511312 other upstream 885869 311532 ~ 313021 (+) True G445422

Expression Profile