RNA id: TU525592


Basic Information

Item Value
RNA id TU525592
length 2506
lncRNA type sense_over
GC content 0.35
exon number 1
gene id CI01000321_03795430_03804685
representative True

Chromosome Information

Item Value
chromosome id CI01000321
NCBI id null
chromosome length 5206101
location 3792915 ~ 3805511 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGATGGATAGATGAGGTGTGATTGCGCAAGCCGGAGGGAGGGAAGACGGTGGAGTGTAAAAAAGGCAGAAGACAGAAATGAAGAACGAAAAAGAGGAAGGAGGTCAGGAATGAGGCCCATTTGAAGAGAATACACAGTGTATCACTATTGAGAGAAAGAGGGATATGAGACTATACCAAGTGATTCTGTAGATCCCTAAATTGCCAAATTCTCAACAAATAGAAACGTGAAGAGGGACTGAGGTTTCCTCTGACCTGTGTGTAGCATATAGTGTTTTGATGGCACCATGGAGATACAAAAGTGGAAAGGTTCATTATTAGAATAGGCCAAGTTTTCTCTAGTTAGCACATTCCAGCTAATGTAAAAGCCAATTGGTTTAGGAGTTAATTTTTGTTTTTCTGAATCCAATTATAGCAGTTGACCTTGCCTCAGAGTTTGCCAATTATTTTTGGTTTCATTCAACGCAAAGTGTCATTCTCAAAGAGGTGTGGGTGTGTGTCACCTTCATCTGTAAAACAAGAGAACAATGAGATACACTGGATAAAACTGACAAGTGTCCAATAGTGTCCTGAATTACCTCATGGAAACTATGATTTGACCGTTCTCAAATCAGATTTGACTTGACTTGGGAATGGATTGTGACTTGGGGAGTATTGTGCGTTTGCCATCAAGTGAAGAAAATGCTGGTAATTCGTCAGAAAGAAGAACTTGGGACTTGAAAAAAAGTCACTCGTTTTGTGACCTGACTCTTTAGTCTGCACTGTTAATATGAGTCCAAATGCCATCAGCCATATTAGAGCTTATTCATATGGAATACAATGGAGGAAAACATTTTCATTGGGAAACGGGTGTTATATTGATGATCAGATATTTTTAGCATCTTATACTCAAGACTGTGAATCAAAGCTGACATGAATACTTGTCGGTTTGGTTTTTTTTGCATTGTGGATAACATTTTGGCTGTTTTATAATATGATCAAAAGACTGTCAGATTGATGGGTAAATCAGGTCATACTATCTGAACTAGATATGTTTGAGTAGACAGATATTTGGAAACTGAAGTCAGCCATTCAAATCTGATAGAAGTCATGCCTCTTTCTTGCATGTTTGACCAGTCAGAGAATAGCTTCGTATGACGGCATCAAACGTTCTGGAGTTACGGTTGTTCTGTTATTAAGTGTTAAGAGCTGAGATTTAGTCATGGGCATGCAGTATGTCAAATAAGACAGCATAGTCTTCACACTTCATTTGCAAATCAAGCTGTTGTATTGAGGGGGGACAGGGGAACGGGTTTACTTATACAATGGACAATTTAATCCAAGGGCTATTCTGAAACTTCTTTATGTGTGTCTGTGCTTCCGTGTTCTTACGGCTTTTTATCTTTTCCCGTGACACGGCTGTGCGGAACATAGAGGCTACATGCCAATGTAAAACAGAAAAATAGAACAAAATCTGCAAAGCTACTTCAACACTCTGTGTCACACTAGGATGCATTATTTAACCGATGAGATAAAATTTAGGAGTAAAAGGTGTCTTGTTTACCTATATTATATTCAAGAAAAATGTCTTTTTTTTGTTAGCGATTTCTGTGTGTTTTTCAGCTGTCTCCACATCAAATGGACACTGTTGTGGTGGAATGTCTGAGAACGACCTGGCTGAGCAAGATTATTGGGCCATAATATAGTATTTTAGATCACTCTGCAATGTTTAAGCTTTTATTAACTTGTTAATAAAACTGAAGTTAAATATGTTGAAAAAGATAAAAAAAAATTGAATTGAATCCCGAATGTTCAAATATGTACACATGCCAATTTATGTGCATATATATATAAATATATATAGTCATCAATATTATTCATATTCTTGATTATTATCATTGTTTTATTTTTTTTCTCTGTGACTTTAGAAATTGTTTTTATTCCTGTTTTCTGTTTATATTTGAGTTTATAGTGGATTCTAACCTTTGTAACTCAACAAAAAAGCAGATGCAATCATAGTGAAAAGACAAAACGCATGAAGATGTCAAAGCCAGTGTTGATGATGTCATATTGCTGACTTCTGATGTCAAGGTGTGTATGTGTCCAGTTTGTGTGTCTGTATTTGTGTGCTTGTGTGTATTTCAGTGTCTATTTTGGAATGCTTTATCTCGCATTTTATCTGACTTTTGCCTTGTGTGAAGTCAGAGAATGTGCATTTCAGAAAACCCAAAATATTATTTTATTTTTTAAGTGTCTCTTTGAATGCAAAAAATAAACAAATCATAAAAAAAATATTTTCCATTGCTGCATTCACCAAAGTTATGGAAAACAGAATAAACAACCATAATTTATTTTTTTTTTTTTTCCAGTATTTTTTTTCTTTTTTTAGATATAAATGTTTCTTGCCATGAATTACATAAACCATGTTGTAAATTTTATGGGGAAAATGCCAAAATGCCATGCATAAAATATTTACAGCAAAAACTTTAATTATTATTTTTAAATAAAATTCTCGCCATTAAGAAAA

Function

GO:

id name namespace
GO:0048172 regulation of short-term neuronal synaptic plasticity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU525606 lncRNA upstream 64413 3736446 ~ 3738593 (+) True G457874
TU525603 lncRNA upstream 70896 3722749 ~ 3732110 (+) True G457872
TU525590 lncRNA upstream 106801 3692881 ~ 3696205 (+) True G457859
TU525569 lncRNA upstream 167526 3631777 ~ 3635480 (+) True G457842
TU525507 lncRNA upstream 230879 3562804 ~ 3572127 (+) False G457797
TU525610 lncRNA downstream 32796 3838307 ~ 3838532 (+) True G457878
TU527061 lncRNA downstream 293510 4099021 ~ 4102339 (+) True G459126
TU527121 lncRNA downstream 430993 4236504 ~ 4236726 (+) True G459178
TU527123 lncRNA downstream 443095 4248606 ~ 4248923 (+) True G459180
TU527124 lncRNA downstream 443558 4249069 ~ 4249296 (+) True G459181
CI01000321_03767896_03783640.mRNA mRNA upstream 19080 3767896 ~ 3783926 (+) True CI01000321_03767896_03783640
CI01000321_03749658_03759359.mRNA mRNA upstream 43361 3749658 ~ 3759645 (+) True CI01000321_03749658_03759359
CI01000321_03739229_03740955.mRNA mRNA upstream 62016 3739229 ~ 3740990 (+) True CI01000321_03739229_03740955
CI01000321_03714795_03718845.mRNA mRNA upstream 83921 3714476 ~ 3719085 (+) True CI01000321_03714795_03718845
CI01000321_03702229_03709660.mRNA mRNA upstream 93198 3702088 ~ 3709808 (+) True CI01000321_03702229_03709660
CI01000321_03811184_03815473.mRNA mRNA downstream 4784 3810295 ~ 3815631 (+) True CI01000321_03811184_03815473
CI01000321_03820289_03828024.mRNA mRNA downstream 14613 3820124 ~ 3828772 (+) True CI01000321_03820289_03828024
CI01000321_03898978_03936261.mRNA mRNA downstream 93467 3898978 ~ 3936261 (+) True CI01000321_03898978_03936261
CI01000321_03937712_03954703.mRNA mRNA downstream 131921 3937432 ~ 3955589 (+) True CI01000321_03937712_03954703
CI01000321_03981145_03984891.mRNA mRNA downstream 175634 3981145 ~ 3984984 (+) True CI01000321_03981145_03984891
TU525588 other upstream 124 3789318 ~ 3789972 (+) True G457857
TU524456 other upstream 2980159 818464 ~ 822847 (+) True G456881
TU524336 other upstream 3375981 426083 ~ 427025 (+) True G456774
TU527032 other downstream 201115 4006626 ~ 4009532 (+) False G459103
TU527033 other downstream 201152 4006663 ~ 4009532 (+) True G459103
TU527265 other downstream 679886 4485397 ~ 4488552 (+) True G459303
TU527165 other downstream 710023 4515534 ~ 4518187 (+) True CI01000321_04515562_04517953
TU527167 other downstream 941901 4747412 ~ 4747464 (+) True G459223

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU197840 True 234 lncRNA 0.40 1 CI01000036 1711530 ~ 1711763 (+)
rainbow trout (Oncorhynchus mykiss) TU2655297 True 3440 lncRNA 0.38 2 NC_050572.1 34789371 ~ 34792949 (+)
tiger barb (Puntius tetrazona) TU197840 True 3479 TUCP 0.41 3 NC_056717.1 17330697 ~ 17334234 (-)
mexican tetra (Astyanax mexicanus) TU426661 True 2819 lncRNA 0.37 1 NW_019172854.1 848144 ~ 850962 (-)