RNA id: TCONS_00020280


Basic Information

Item Value
RNA id TCONS_00020280
length 3356
lncRNA type antisense_over
GC content 0.36
exon number 4
gene id XLOC_010264
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 48668314 ~ 48677034 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGCTGAAGGGCATTAGTGCAGTGATGAGGGACAAAAGCTTTCACAGGTGCAGGCTGGAGGAAGACCAACCCGCACAACAGCTCTCGCTACAGCTTTCAAGGATGTCCTGTTGGGTTTTTTTCAATACACCTGATGAGAAAAtgtcTTACTATCTCCAAGCAGTCCTGGACTCACCTTGAGCGGATCTGCACAGAGACCACAGTATGAAGGTAAACCTCAGTATCAAGTGCATGACAGAAACCACAGAAGCAGATTCAGGGCTCCAGATCCTCTTCACGAATCCtcctaaaatGAGCGCGACGGAAATATGGACGACTTCCTGCCACTGTGTGGAGAAGAATAggagtgaatatgtgtgtgtgcgagtcTGAAAGGTCAGCTTTATCGCAGGAGTTTGAGCTACCTTTGAGACTGTTTATTGTGCGGCGCGAATTGTGTCGAAGGAAATTTGACAGGACAATCGAACAATGCCGCACAAAAAAGCCTTCACTTCCTTGTGTGCAAACTAGACATAATATCTGATTTTTATTATGCGTGCTAAAATGTGTTTCTTTTCTTAGCAGTTTGTGTTGAAGATTGACACTCACACTATTgtttaaaatggtatttttattttttcacactttaggttttaaatgtatgtaaaactaatcatattgtacaaacattcatagattttattttattttaccaaaagcaaacaaagaaaaaaagctgAATATCAGAGAGatttaaaatgatgatgataataacattaataataacaataataataacaataataataataataataataataacaataataaacttAAAGGCTACGCAAGTTtcacacccagtggttgaactagggattgcattcctggatcaaaacacacgcaagtgcgggttgccagattgatgacatcaaCAGGAGCGAACCTGACTATCGAGCCCCATCttataataaactaaaaaatattaaaaggagttttgtcCTAACCAAGACATCtgattgatatattagaaacagccTCTATTTCTCACtagtgaacaacagaaaactgacaatgatcacctcgtgtgagcccgatggagcgagtgtttacaagtgtggagtctcgcGTAGGAGCTCTAGACGGAGACAGTTGTTTTGTGCTTAccctatgattaaagttgtttcacgtccgccgaTTCCGACCcttaaaatgagcaagtttgagccgcTTTTACATTaaggcatacctgccaacactcccgggAGTGAAAAACCCATCTCCTGTATTGGGTTatctcctggaaaactcctggAATTCATcaactctcattcattcattgttttgagaagctgaagctgatgaggtcATTTATGTGTAATGGATAAAAAATAAGTGGGGCAATATTATCATTTGTAGCCATGGCTCCAACCATTCTGctggagttttttatttttattttatttcataaattcaAAGGTCAAATTCCTGGGGCAAAATCAGCTGATGATGGGAGGTGGATTATTTTATCACTTTAACAGGATAACTCGAactttaatatttgtaatatttatggtTGTAATTCTAGATCTGATAATAAATCTTTGTTTTCGTAAATAACTTTGGAACTAAAAGAAACAATTGGTAACTAGACACTTTTATGCTTCTAGCTGGTGATTTTATTGAGTGTGATGATGGCACTTTGGATAGATTTCCTCCCAGGAGAAATGATTGTcttcttttaaataataatatttcagctTTATGTTCAGGATTTTGCACATACTTGGCACTTTTTTCACCCTTATTTACAGTATGTGACTTCACCTGGTCTAATAGAAATAGATCCTACCAGTCAagaattgatgttttttttttttgctctcctCCTCAGTCCTTCAATTTGTAAATGATATTTCCCACTCATTTGCTCCCCTTTCAGGtcataaacaaattatattaaaaatgtctGGCAATACCAATGAACTCCTAAATTTGCGTGgttattgaaaatacaataatTCCCTTTTGAAAGATAATTCTTTTAATGATAGTATTAAAGATTTAATTCCAGGTATTTTCCAAAAAtctgttaatatttataaaacaaaatgtttttttttttctagtaaaGCTAGACAGATTGCTATTCGAAGAATTAAAGAACTGAAGGcgtcaaaaatataaaatatgtaaactcttgatagaaataaattatttattgctCAAAATACTAACTCCAGAAGAAGTTTTGCATTTAaggaatttaaatattaaaattaatcagGCTTATTTGGACTTGGCTAAAGGGGTGTTCGTTAGATCAAGAGCAAAATGGCTTGAGGAGGGAGAgactacaattttatttatttttttgctttagagAAGAAGAACTGCAGGAGAAAGTCATTAACAGCGCTCATCATAAATGATGTCAGGTGTACAGATCCAAAAGTAATTTCTACTTTTGACTCTATTTTCTATAGTAACCTTTCTGAATTATATATAGATAGTTgtcaaaatctttttaaaaacaattgaaaATCATATTTCCTCTATTGATATTGATTCTAAAGATATTTGCGATGCCACGTTGACAATGGGGGAAATTAAATCtgcattatttttttccattaaaagTCCTAGCTAGTCGACGTTTCCGAATTAGctgacatttctttctttttcatcatCTTCCTTTTATCATTCTTCCTTTTCTAATCAGCTGACATGTTTTTAAATCGGTTGGGGTAAGTAAATATTACTTGTAATGACCACCTCCCTCCCTATCTTTAATTCACCTTAAAGAGGGCAACAGCCTTCATTTTGGGCTTAGTATTTTTCCATCCGGATCCTCATAGTCAGCGTTGGCCGGTGTGTAACAGGGGCtttgtccgaaaccgcatacttctatactgtatagtacgctaaaatcagtacgcgagctgagtagtatgtctgaattcatagaattggaaaatcagtatacgagaagtacccggatgacttactaccgGTAGATTCTGAGAGTGCAAAACCGCCTTCTACTCagaaggtactgcatttgaattcaaTCGTACTACTCGGCCGCTAGAAAAATGTGTGAGAAGtttgaatggaattcggacgtactacatctgccatttgtcatggtcacgtgacctatcagttgcgtcgcttcactcccattcatgaattctctcaaaagaaatcatgggatagcgcagcatgaatgggatgcgcacttcagaatcttgccggaagtagtaattCATCCGGGTAGTTCTCCCATACTGATTTTAGAATTCTATAAATTTGGACATACAAGCATACTTATTTTAGCATActttatagtatggaagtatgcggtttggAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021755 lncRNA upstream 672049 47998832 ~ 47999411 (+) True XLOC_010258
TCONS_00021754 lncRNA upstream 906641 47764225 ~ 47764819 (+) True XLOC_010257
TCONS_00020271 lncRNA upstream 1240543 47428789 ~ 47430917 (+) True XLOC_010256
TCONS_00021753 lncRNA upstream 1282082 47383795 ~ 47389378 (+) False XLOC_010255
TCONS_00022038 lncRNA downstream 484385 49161419 ~ 49164092 (+) True XLOC_010270
TCONS_00022039 lncRNA downstream 924575 49601609 ~ 49618621 (+) False XLOC_010273
TCONS_00020305 lncRNA downstream 1423386 50100420 ~ 50101911 (+) False XLOC_010276
TCONS_00021757 lncRNA downstream 1558346 50235380 ~ 50260317 (+) False XLOC_010278
TCONS_00022040 lncRNA downstream 1563286 50240320 ~ 50260134 (+) False XLOC_010278
TCONS_00020276 mRNA upstream 28269 48616220 ~ 48643191 (+) False XLOC_010263
TCONS_00020277 mRNA upstream 28280 48616297 ~ 48643180 (+) False XLOC_010263
TCONS_00020278 mRNA upstream 28288 48626780 ~ 48643172 (+) False XLOC_010263
TCONS_00020279 mRNA upstream 30279 48631412 ~ 48641181 (+) True XLOC_010263
TCONS_00020275 mRNA upstream 97950 48460873 ~ 48573510 (+) True XLOC_010262
TCONS_00020284 mRNA downstream 1621 48678655 ~ 48705831 (+) False XLOC_010265
TCONS_00020285 mRNA downstream 5275 48682309 ~ 48708045 (+) True XLOC_010265
TCONS_00020286 mRNA downstream 37014 48714048 ~ 48747788 (+) False XLOC_010266
TCONS_00020287 mRNA downstream 37044 48714078 ~ 48725396 (+) False XLOC_010266
TCONS_00020288 mRNA downstream 52913 48729947 ~ 48746341 (+) True XLOC_010266
TCONS_00020274 other upstream 414330 48257013 ~ 48257130 (+) True XLOC_010261
TCONS_00020273 other upstream 513037 48158309 ~ 48158423 (+) True XLOC_010260
TCONS_00020272 other upstream 648052 48023293 ~ 48023408 (+) True XLOC_010259
TCONS_00020265 other upstream 1659003 47012341 ~ 47012457 (+) True XLOC_010251
TCONS_00020229 other upstream 3004608 45666735 ~ 45666852 (+) True XLOC_010222
TCONS_00020297 other downstream 870737 49547771 ~ 49547886 (+) True XLOC_010272
TCONS_00020308 other downstream 1563289 50240323 ~ 50254974 (+) True XLOC_010278
TCONS_00020312 other downstream 1830142 50507176 ~ 50507295 (+) True XLOC_010284
TCONS_00020313 other downstream 2063946 50740980 ~ 50803345 (+) False XLOC_010281
TCONS_00020323 other downstream 2505037 51182071 ~ 51183994 (+) True XLOC_010292

Expression Profile

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