RNA id: CI01000344_01274460_01279238.mRNA


Basic Information

Item Value
RNA id CI01000344_01274460_01279238.mRNA
length 1485
RNA type mRNA
GC content 0.49
exon number 8
gene id CI01000344_01274460_01279238
representative True

Chromosome Information

Item Value
chromosome id CI01000344
NCBI id null
chromosome length 3248351
location 1274460 ~ 1279516 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATTACTCAAGTATTTGATGACATTTGCTACCGCGGCGTCTTCTTCCAAATCTTCATCCCAGTTATCCTCTTCTTCCGTCATTTTTTACGTTTAAAATGTAGTTATATTTTTTCCTATGCTAAACTTCAGGGGTGAAAGACAAACTCCCCTAAACTAAGCTGAAGTAACCAGAATAGGTTCACTACTCCACAGATGGACGGTTTTATTTGAAAGGGGGCGGAGTAGAAACGCGCTGTCCCTTTGCGCTCACCGTACAATGTGTTTTTTCAATCCAAGATGGCTGCGCTCAGGGGCAGAGTGGTGACAGAATGTCTTACAACATGTATGTTTCGACAAACAAGCACATCGAGCATTTCCACTCTTCCTATTGTTATGACAGGGAATAAGTGGTTTGTACAGAGATCACATCTTCACACTGGCAGAGGAAGTAGGAGTCCTTTAGTTAGGGCACTTCTTGGGTGTCCCAATCATGGCCAGTTCCTGCTGGTCAGTGCTGTGGCCGTCAGACACAACAGCTCACAGACGATAGAAGCAGTTCAGAGCGTGTCGACTCCAAGTGAAATGGCAAATGCTGCTGTATCTGTCCCAGTGTCCATTCCAAGTCCTGCTGCTGACCTCACCTCCACAGTCACACCACCAATCACAGAGCAAGTGGCCGAGGCTCCTCTCACTGCATTGGATGTTCTGCAGGGGGTTGGAGCTGAAGCCAGCCTATCAGAGCTCGGCCTGTGCAGTTACACACCTGTGGGTCTGATCCAGAATCTGCTTGAGTTTATGCATGTTGGCATTGGGCTGCCATGGTGGGGGGCCATTGTTGCAGGCACCATTGTTGCTCGGTGTGCTGTGTTCCCGGTCATTGTAAAGGGACAGAGAGAAGCAGCCAAACTGAACAACGTCCTGCCGGAAATGACAAAACTCACCGACCGCATGAATGAAGCCAAGCAGAGCGGTAACAAATTTGAATTTTCAAAGGCATATACTGACTTGATGATGTTTCAGAAGAAACATGATGTGAACCCTTTGCGTGGGTTCCTAGTGCCCTTGGTACAGGCTCCAATCTTCGTCTCTTTCTTCATTGCCTTGCGCAAGATGGCTGATCTCCCTGTACCAAGTTTGCAGACTGGCGGCCTCTGGTGGTTCACAGATCTAACTGCATGTGATCCATTTTACATTCTCCCCATTGCTGTGACTGGCACAATGTTTGCCATCTTAGAGTTGGGAGCTGAATCTGGTGTAGACAACCCCAATCTGAGGGCCATGAAGACCGTCTTCAGGATCATGCCCTTTGTTATCCTGCCTCTAACGATTAACTTCCCCACGGCGGTGTTTACCTACTGGATGACCTCTAACCTCTTCTCACTGGGTCAGGTGGCCCTGCTGAAGCACCCGGCAGTGAGACAGAAGTTCCGCATCCCAGAACGCATCGCACACCCACCTTCAGCACTACCTAAGAATGAAGGCTTCATAGAAAGTGTCAAGAAAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K03217 yidC, spoIIIJ, OXA1, ccfA; YidC/Oxa1 family membrane protein insertase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU573197 lncRNA downstream 18331 1254040 ~ 1256129 (-) True G499693
TU573298 lncRNA downstream 57185 1217005 ~ 1217275 (-) True G499782
TU573165 lncRNA downstream 64005 1209867 ~ 1210455 (-) False G499666
TU573167 lncRNA downstream 64005 1209867 ~ 1210455 (-) True G499666
TU573205 lncRNA downstream 66453 1207124 ~ 1208007 (-) True G499701
TU573300 lncRNA upstream 7635 1287151 ~ 1287765 (-) True G499784
TU573301 lncRNA upstream 8704 1288220 ~ 1288479 (-) True G499785
TU573194 lncRNA upstream 54269 1333785 ~ 1338281 (-) True G499690
TU573306 lncRNA upstream 59841 1339357 ~ 1339600 (-) True G499788
TU573309 lncRNA upstream 66958 1346474 ~ 1346683 (-) True G499791
CI01000344_01243421_01244832.mRNA mRNA downstream 29588 1243175 ~ 1244872 (-) True CI01000344_01243421_01244832
CI01000344_01224910_01235323.mRNA mRNA downstream 39137 1224564 ~ 1235323 (-) True CI01000344_01224910_01235323
CI01000344_01178860_01181710.mRNA mRNA downstream 92122 1178860 ~ 1182338 (-) True CI01000344_01178860_01181710
CI01000344_01148037_01163418.mRNA mRNA downstream 111042 1147735 ~ 1163418 (-) True CI01000344_01148037_01163418
CI01000344_01024079_01086671.mRNA mRNA downstream 187789 1023396 ~ 1086671 (-) False CI01000344_01024079_01086671
CI01000344_01296456_01300324.mRNA mRNA upstream 16739 1296255 ~ 1301038 (-) True CI01000344_01296456_01300324
CI01000344_01304721_01306012.mRNA mRNA upstream 25073 1304589 ~ 1306012 (-) True CI01000344_01304721_01306012
CI01000344_01431820_01432444.mRNA mRNA upstream 152195 1431711 ~ 1432444 (-) True CI01000344_01431820_01432444
CI01000344_01447033_01450829.mRNA mRNA upstream 167056 1446572 ~ 1450829 (-) True CI01000344_01447033_01450829
CI01000344_01452485_01455509.mRNA mRNA upstream 172540 1452056 ~ 1456894 (-) True CI01000344_01452485_01455509
TU573195 other downstream 33778 1235781 ~ 1240682 (-) True G499691
TU573190 other downstream 101469 1169109 ~ 1172991 (-) True G499686
TU573163 other downstream 314768 957149 ~ 957187 (-) True G499664
TU573086 other downstream 606314 651860 ~ 668146 (-) True G499601
TU572974 other downstream 934595 337073 ~ 339865 (-) True G499520
TU573324 other upstream 134500 1414016 ~ 1419068 (-) True G499804
TU573330 other upstream 142835 1422351 ~ 1423174 (-) True G499807
TU573489 other upstream 527144 1815542 ~ 1815948 (-) True G499918
TU573592 other upstream 838855 2118371 ~ 2120477 (-) True G499994
TU574122 other upstream 1458822 2738338 ~ 2745521 (-) True G500490

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00067443 True 1551 mRNA 0.49 10 NC_007118.7 19588608 ~ 19600181 (-)