RNA id: TCONS_00020585


Basic Information

Item Value
RNA id TCONS_00020585
length 1863
RNA type mRNA
GC content 0.40
exon number 9
gene id XLOC_010488
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 11911897 ~ 11946139 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTCGGTTTGATTCTAATACCGCTGTTCATTACAGTACTTAAAGCACAAGAAAGCCATGAAGTCATTTACGCACAGGTAGGAGGGACTGTCACCCTACCCAGAGAAAAGATTGAACGAAAATATAGCAATATTAAAACACAAGATATTTATGTGAACTGGTTCCTTGAGAGTACTCTGACAATCAACAGGAACCCGCAGAGTAGCAGCAGTAAGGGGACAAACACACGCGTCTCTCTATCAGCAGATTTCTCTCTTCAGATCTCACCAGTTGAAGAGTCTGATTTTGTCATTTGGCGCTGTGTACAACATGTATTAGCAGGAAATTACGAAAAGACCTACAAACTGTACAAAGTCTCAATTCCCAAAGTGCCTGCTCTGCTGGTTGGTGGTCGCCTGTCTCTGAAATATGTAAAGGATGTTAGTTCAGTTAATCCCAGTGTAACATGgatttcacctaaaaatgaaggcTGTCAGGAAAATAAGAATACTAAAGATACAGTTTTAGTCCCCAGTGTGTCCACATGTCATAATGGTGTTTGGACATGCCAGTTGAAGtatggaaataaaaaaactgaggCAACAACTACTGTTTCTGTTATAGACCTTGCCCCTTCTCCAGCAGATCCCATTTATACCTCTATCTCTCAATCCTCGACAGTCAGCATTCCCTGTGCTTTGTCTTCTGCAATTCCCTGGTCGGTCTTAAATGAAACTCTTCAGGGTGGGAGCTGGAGCTTCACTCCTCTCAGTGAACCTCGGTCGCCTTTATCTCTCCTCACCCTCAATGTTGGTTCGGTGGTCCGATGGGATCTCGCAAACGGCGCAAACTTCACTGACGGCAAAAGAGTCATAACTAACCACAACCTGTCCATTCAGAATCTGCCTGTAAAAGAAACAATCAGAGGGGTTTACAAATGCAGTCTGAAATTCAACACCAAGACCATCAGCCGTGAAGTCAAGGTGGAGGTTTTGAAGGTTTCCCCTTCTGGAATTTTGAAAGTATTCGAAGGCACAAGGTTGAATGTGACATGCTCATTAGGACATATGAACACCGCTGGCCTTGAGGTGAAATGGGCATGTGCATCAAACTGTCCTCCTTTCAATCACAAGTCTCCGCCTCATCTGTCAGTTCTGTCCTTCCCTAATATCAGGATGCAGGACAAAGGCCTGGTCAAATGTGAACTCTGGAAAAATAGCCAAAAGCTGACATCAGCTCAGCTATATTTAAGAGTTGAGAAAGCTCCAGTGGACATCTGGCTGTGTGTTGCCATCGGGAGTGGAGTGGTGGTCTTCATCTTGCTTGTTGCATTCGCCATCATATACATCCGCAGACACAAACAGATGATGATGTACAGACGACGCAAGACCAGATTCTGCTGCTGTAACAATAACAAACAGCCAAAGGGATTCTACAAGACCTGAGGATCTTCTGCTTTTCAATTTTATTACTGATTTTCTAAATCAGAGTTAATGTACAGTTCTTTGCACAATGTTTGCCATTTCAGAAATGACTGTGTTCAGTGCGCAGATGAGGATGCTggtatttctttattattgtcaaatacaataataaaagtacacacatacaatattattttattatgtaaatattttgataataGCATGATATGatgtcattaaataaaataatttgctaAATTTTGTAATCATTGATTTTGTCTGTAGGTTTTGTTATATTCACATTTAGTGCCTTGTTATATAGTGTTGATATTTTTTATGTTCTCCTGTTTACTTACTGTGTGCTCTTTAGCATTTGTAAATGATCTTTTTCCTCTGATTGCTTGTATTTCTTTATTTGAGAACAGCAACaggttgataaaataaaataaaattagtttg

Function

GO:

id name namespace
GO:0042110 T cell activation biological_process
GO:0070374 positive regulation of ERK1 and ERK2 cascade biological_process
GO:0035723 interleukin-15-mediated signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0045121 membrane raft cellular_component
GO:0009897 external side of plasma membrane cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:1990782 protein tyrosine kinase binding molecular_function
GO:0042289 MHC class II protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-280 Predicted to enable MHC class II protein binding activity and protein tyrosine kinase binding activity. Predicted to be involved in T cell activation; interleukin-15-mediated signaling pathway; and positive regulation of ERK1 and ERK2 cascade. Predicted to act upstream of or within adaptive immune response. Located in cell surface. Is expressed in blood; digestive system; gill; immune system; and muscle. Human ortholog(s) of this gene implicated in immunodeficiency 79. Orthologous to human CD4 (CD4 molecule).

Ensembl:

ensembl_id ENSDART00000183229

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020576 lncRNA downstream 132462 11775141 ~ 11779444 (-) False XLOC_010484
TCONS_00022126 lncRNA downstream 272434 11597384 ~ 11639472 (-) True XLOC_010483
TCONS_00022125 lncRNA downstream 373085 11530885 ~ 11538821 (-) True XLOC_010482
TCONS_00020570 lncRNA downstream 373538 11437869 ~ 11538368 (-) False XLOC_010482
TCONS_00021786 lncRNA downstream 670686 11234889 ~ 11241220 (-) True XLOC_010481
TCONS_00022127 lncRNA upstream 31856 11960630 ~ 11961493 (-) False XLOC_010489
TCONS_00022128 lncRNA upstream 32911 11961685 ~ 11963079 (-) True XLOC_010489
TCONS_00022129 lncRNA upstream 63792 11992566 ~ 12005084 (-) True XLOC_010491
TCONS_00020593 lncRNA upstream 123532 12052306 ~ 12054234 (-) False XLOC_010493
TCONS_00020617 lncRNA upstream 549923 12478697 ~ 12481849 (-) False XLOC_010505
TCONS_00020582 mRNA downstream 52597 11853457 ~ 11859309 (-) True XLOC_010487
TCONS_00020581 mRNA downstream 53897 11853212 ~ 11858009 (-) False XLOC_010487
TCONS_00020580 mRNA downstream 112912 11790640 ~ 11798994 (-) True XLOC_010486
TCONS_00020579 mRNA downstream 122798 11786054 ~ 11789108 (-) True XLOC_010485
TCONS_00020578 mRNA downstream 123862 11785967 ~ 11788044 (-) False XLOC_010485
TCONS_00020586 mRNA upstream 31643 11960417 ~ 11961325 (-) False XLOC_010489
TCONS_00020587 mRNA upstream 31814 11960588 ~ 11963804 (-) False XLOC_010489
TCONS_00020588 mRNA upstream 32911 11961685 ~ 11962959 (-) False XLOC_010489
TCONS_00020590 mRNA upstream 36597 11965371 ~ 11986321 (-) False XLOC_010490
TCONS_00020589 mRNA upstream 36597 11965371 ~ 11986321 (-) True XLOC_010490
TCONS_00020572 other downstream 132434 11760919 ~ 11779472 (-) False XLOC_010484
TCONS_00020567 other downstream 995502 10916290 ~ 10916404 (-) True XLOC_010478
TCONS_00020565 other downstream 1074674 10829809 ~ 10837232 (-) False XLOC_010476
TCONS_00020559 other downstream 1650281 10255207 ~ 10261625 (-) True XLOC_010469
TCONS_00020535 other downstream 2609712 9302079 ~ 9302194 (-) True XLOC_010455
TCONS_00020591 other upstream 83300 12012074 ~ 12012188 (-) True XLOC_010492
TCONS_00020603 other upstream 310633 12239407 ~ 12239460 (-) True XLOC_010497
TCONS_00020604 other upstream 319088 12247862 ~ 12247920 (-) True XLOC_010498
TCONS_00020605 other upstream 321494 12250268 ~ 12250323 (-) True XLOC_010499
TCONS_00020606 other upstream 324641 12253415 ~ 12253471 (-) True XLOC_010500

Expression Profile

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