RNA id: CI01000360_00693283_00703172.mRNA


Basic Information

Item Value
RNA id CI01000360_00693283_00703172.mRNA
length 835
RNA type mRNA
GC content 0.56
exon number 9
gene id CI01000360_00693283_00703172
representative True

Chromosome Information

Item Value
chromosome id CI01000360
NCBI id null
chromosome length 778440
location 693283 ~ 703172 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAGAGGGCTCTCTGTGTGCACAGCACTGCTTGAACAACCTCCTGCAGGGCGAGTACTTCAGTCCGGTGGAGCTGTCGTCCATCGCGCACCAGCTGGACGAGGAGGAGCGCATGCGCATGGCTGAGGGAGGCGTCCAGACGGAGGAGTACAGGACCTTCCTGCAGCAACCGTCGGGAAACATGGATGACAGCGGCTTCTTTTCCATTCAAGTGATCAGTAACGCGTTGGGGGTTTGGGGTTTGGAGATCATTCTGTTCAACAGCAGAGAGTACCAGCAGCTACGGATTGATCCCATACACGAGAAGGCCTTTATATGTAACTATAAGGAGCACTGGTTTACAGTGCGTAAGCTAGGACAGCAGTGGTTTAATCTGAACTCGCTGTTGACCGGACCAGAGCTCATATCAGACACGTACTTAGCCCTTTTCTTAGCACAGCTACAGCAAGAAGGTTATTCTATATTTGTGATCCGGGGAAACCTGCCAGATTGTGAAGCCGATCAGATTTTGCGGATCATGCGAGTGGAGCAACAGCAGCGGCCGAAGCTGATCGGAGAGGACGAGGCCCAGAGGATGTCGGTGCAGCCGGTGTCAGAGACACCAGCCCCCGGGGATGAAGTGCCGCTGGATGAGGATGAGGAGGAGCTGAGGAAGGCTCTGGCTCTCAGCAGACAGCACATGGAGGTGGAGGATGAGGAGGCCGACCTACGCAGAGCCATTCAGCTCAGCATGCAGGGAAGCAGCGAGAAGGAGACGCTCACCGCAGAGGAGCTGCGCAAGAGGAGACAGGCCTACTTCGACAGGCAGCAACAGGCTCACGACAGCAGCACCGCCG

Function

GO:

id name namespace
GO:0008242 omega peptidase activity molecular_function

KEGG:

id description
K11863 ATXN3, MJD; Ataxin-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU594471 lncRNA upstream 13476 679582 ~ 679807 (+) True G518309
TU594299 lncRNA upstream 301074 292252 ~ 392209 (+) True G518142
TU594301 lncRNA upstream 383593 301795 ~ 309690 (+) True G518144
TU594266 lncRNA upstream 490346 202513 ~ 202937 (+) True G518118
TU594253 lncRNA upstream 521135 171928 ~ 172148 (+) True G518105
CI01000360_00667891_00672778.mRNA mRNA upstream 20505 667891 ~ 672778 (+) True CI01000360_00667891_00672778
CI01000360_00647308_00657918.mRNA mRNA upstream 34878 646834 ~ 658405 (+) True CI01000360_00647308_00657918
CI01000360_00631283_00631570.mRNA mRNA upstream 61391 630100 ~ 631892 (+) True CI01000360_00631283_00631570
CI01000360_00577462_00621640.mRNA mRNA upstream 71638 577462 ~ 621645 (+) True CI01000360_00577462_00621640
CI01000360_00461890_00465387.mRNA mRNA upstream 227714 461703 ~ 465569 (+) True CI01000360_00461890_00465387
CI01000360_00707496_00714052.mRNA mRNA downstream 4254 707426 ~ 714255 (+) True CI01000360_00707496_00714052
CI01000360_00732225_00740320.mRNA mRNA downstream 29053 732225 ~ 740320 (+) True CI01000360_00732225_00740320
CI01000360_00744240_00749143.mRNA mRNA downstream 41068 744240 ~ 749216 (+) True CI01000360_00744240_00749143
CI01000360_00756125_00759689.mRNA mRNA downstream 52346 755518 ~ 759761 (+) True CI01000360_00756125_00759689

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023349 True 936 mRNA 0.60 11 NC_007128.7 53284040 ~ 53289749 (+)
bowfin (Amia calva) AMCG00000128 True 1030 mRNA 0.55 7 CM030141.1 4796369 ~ 4803426 (+)