RNA id: TCONS_00020938


Basic Information

Item Value
RNA id TCONS_00020938
length 493
RNA type nonsense_mediated_decay
GC content 0.41
exon number 5
gene id XLOC_010696
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 24656958 ~ 24661526 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTAATGAAACACAAAATTACAGTATTGGAAATACAGAAAACCACTGAACTGTCTCACGTAAAGATGCAGCTGCAGCACAGCTCTGAATCGCTGAGAACTTGTCAGTGAACAATTGCGCTTCTGTAGTAAATGCTCCATCTGAGGCCGTGTGCATACGAACATGGGAAGTTGATGTGGGATCACTCTGTGATAACATTGAGGTGGATCGTGAGTCTGGAGATTTGTGGCTGGGTTGTCATCCAAACGGttataaattgtttttttctgatCCAAATGATCCGGCTGGCTCTGAGGTAATCAAGATTGAGAACATCCTCTCTGAAAAGCCTAGAGTGACTCAGGTGTATTCAGATGACGGAAGTGTGATCATCGGCTCATCAGTGGCAGCTCCATATAGAGGAAAACTGCTCATCGGAACAGTTTATCAGAAAGCTCTCATCTGTGACCTTAAATAGTGATACTTACAaatgaacattaataataaaaattctt

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0004064 arylesterase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-70 Predicted to enable arylesterase activity. Predicted to be located in extracellular region.

Ensembl:

ensembl_id ENSDART00000154636

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020927 lncRNA downstream 60283 24596148 ~ 24596681 (-) True XLOC_010693
TCONS_00022164 lncRNA downstream 661635 23987716 ~ 23995329 (-) False XLOC_010686
TCONS_00022163 lncRNA downstream 663733 23984776 ~ 23993231 (-) False XLOC_010686
TCONS_00022165 lncRNA downstream 665118 23990570 ~ 23991846 (-) True XLOC_010686
TCONS_00020910 lncRNA downstream 864090 23788618 ~ 23792874 (-) True XLOC_010684
TCONS_00020941 lncRNA upstream 12503 24671160 ~ 24672862 (-) True XLOC_010698
TCONS_00022166 lncRNA upstream 48112 24706769 ~ 24708587 (-) True XLOC_010700
TCONS_00020950 lncRNA upstream 341022 24999679 ~ 25012398 (-) True XLOC_010703
TCONS_00022167 lncRNA upstream 409847 25068504 ~ 25072892 (-) True XLOC_010704
TCONS_00022168 lncRNA upstream 579593 25238250 ~ 25241068 (-) True XLOC_010708
TCONS_00020936 mRNA downstream 699 24646600 ~ 24656265 (-) True XLOC_010695
TCONS_00020931 mRNA downstream 14149 24601144 ~ 24642815 (-) False XLOC_010694
TCONS_00020935 mRNA downstream 14150 24607749 ~ 24642814 (-) True XLOC_010694
TCONS_00020934 mRNA downstream 44065 24607749 ~ 24612899 (-) False XLOC_010694
TCONS_00020930 mRNA downstream 44086 24601144 ~ 24612878 (-) False XLOC_010694
TCONS_00020939 mRNA upstream 3595 24662252 ~ 24668620 (-) True XLOC_010697
TCONS_00020940 mRNA upstream 11226 24669883 ~ 24672919 (-) False XLOC_010698
TCONS_00020942 mRNA upstream 40192 24698849 ~ 24703603 (-) False XLOC_010699
TCONS_00020943 mRNA upstream 40363 24699020 ~ 24703855 (-) True XLOC_010699
TCONS_00020944 mRNA upstream 47195 24705852 ~ 24708586 (-) False XLOC_010700
TCONS_00020920 other downstream 138924 24253203 ~ 24518040 (-) True XLOC_010689
TCONS_00020921 other downstream 262501 24394346 ~ 24394463 (-) True XLOC_010690
TCONS_00020907 other downstream 1064365 23592464 ~ 23592599 (-) True XLOC_010682
TCONS_00020906 other downstream 1133589 23523261 ~ 23523375 (-) True XLOC_010681
TCONS_00020902 other downstream 1310913 23339390 ~ 23346051 (-) True XLOC_010678
TCONS_00020957 other upstream 669874 25328531 ~ 25328647 (-) True XLOC_010710
TCONS_00020965 other upstream 845901 25504558 ~ 25509098 (-) False XLOC_010716
TCONS_00020982 other upstream 995038 25653695 ~ 25663669 (-) True XLOC_010720
TCONS_00021003 other upstream 1719640 26378297 ~ 26379442 (-) True XLOC_010732
TCONS_00021035 other upstream 2936905 27595562 ~ 27598677 (-) False XLOC_010752

Expression Profile

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