RNA id: TU799096


Basic Information

Item Value
RNA id TU799096
length 380
lncRNA type read_through
GC content 0.39
exon number 1
gene id G678452
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 63236 ~ 63615 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAATGCATCATGGAGTTATTAAACAGATTGTTTTACCCAGGAAACTGAAGTCACTGTTGTCAAGGCGTTAACTGAGACACTATTCATTCACAACCTACAGACAGATTTTGAATCGTTGCGGCAAACTGTGTCGGGTGAAGTGGGCGTCACCAAAAGCGCTCAAGAGAAAGTCTCTGTGTGTGTGTGGACCTGTGACTCTACATGAATGACTCAAGTGAAGAACACGCGTGAAACCACTATTTCAAAGGAAAAAGAAGAGGAAGAGGGGACATCTTGAACATTCGCAGTGGAACTTGAGTGCGCATCAGGCGCAAAGTCTCTCCAAAGTCACTTGGTAACTTTTGCGCACAAGTGCAGCTCCATTCTCAAGCAGTTTTGTGGTCACGCCGAGGAGCGACTGTCGTCCGGCGGACTGGCGTCAGACGTGGGCCGCAGCACTTGAGGTCAGCGCACACTGTTTATGCTGCCTTCAGGTCCTCCTGGGAAGTTCCTACTTAAGAGCTCAGAAGACGTAATTATGATGTGATGCATGCAAAGTGATTTTGATTGAAAAAATATGGAGGACAAAGCATTTTAGTCCCAGTTCAACAAAATGTGATTCATGCTGTATTTTATGTGTTTTTATCATTCTTCTGCAACTACAAAGAATGATGGAAAATGTTTACAAAATTGATTTACATTAAATCAGCATTGACTGTTATAATTTACACTATGATCAATAGAGCACAACAGTGACCACTTCCAATAGTATTTTTCTCATTCATTGATTTATCAAAAAAGTCTCGTTTTAAACCATGAATCAAAACAACCAGCTCAGAAATGAATCACAAACATGCCTTGCAGCCAAAAATATAAGAAAATCTGGAAAAAAAAGTCTTAAGGTACAAGATGGTGTGCTTTCAATGATCTATAATATAAAACTTTTGACTTGTAGTCATACATTACATCTTTTTTTTTGTTATATATCATTTATGTTAAAGGATTAGTTCAGTTCAGAATGAAAATTCCCTGATGATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU799098 lncRNA downstream 7410 113772 ~ 118958 (+) True G678454
TU799099 lncRNA downstream 26438 132800 ~ 138730 (+) True G678455
TU799083 lncRNA downstream 67449 173811 ~ 174711 (+) True G678446
TU799116 lncRNA downstream 74186 180548 ~ 180803 (+) True G678472
TU799121 lncRNA downstream 81971 188333 ~ 188553 (+) True G678477
CI01180000_00009241_00055691.mRNA mRNA upstream 7286 9241 ~ 55950 (+) True CI01180000_00009241_00055691
CI01180000_00250154_00256723.mRNA mRNA downstream 143792 250154 ~ 258668 (+) True CI01180000_00250154_00256723
CI01180000_00263000_00297934.mRNA mRNA downstream 156638 263000 ~ 298466 (+) True CI01180000_00263000_00297934
CI01180000_00306160_00314770.mRNA mRNA downstream 199798 306160 ~ 315744 (+) True CI01180000_00306160_00314770
CI01180000_00361420_00364335.mRNA mRNA downstream 255058 361420 ~ 365126 (+) True CI01180000_00361420_00364335
CI01180000_00368639_00375465.mRNA mRNA downstream 262277 368639 ~ 376247 (+) True CI01180000_00368639_00375465
TU799069 other downstream 41572 147934 ~ 151652 (+) True G678440
TU799410 other downstream 953481 1059843 ~ 1066091 (+) True G678751
TU799296 other downstream 1043189 1149551 ~ 1155672 (+) True G678637
TU799630 other downstream 1411991 1518353 ~ 1556151 (+) True G678946
TU799769 other downstream 1688808 1795170 ~ 1799433 (+) True G679076

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00013681 True 337 lncRNA 0.48 3 NC_007124.7 47189134 ~ 47453908 (+)
tiger barb (Puntius tetrazona) TU140407 False 1094 lncRNA 0.39 2 NC_056711.1 18900618 ~ 18933128 (+)