RNA id: TCONS_00021815


Basic Information

Item Value
RNA id TCONS_00021815
length 2162
lncRNA type inter_gene
GC content 0.41
exon number 7
gene id XLOC_010866
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 34557016 ~ 34565638 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTCAATGTAGATTCTGCGTTTTTACAACAACATGTTGTAGTGTGGAATTATGGGATTTCGCGGGCTGATGCAGATTTGAAATATGGTGGACTGGACAAGCGGGAGAAAACAGAAGGCATTATTCGTTAATTTCAAGGAACTTTGGTGAAAAAATCAAGACGTGGTGAATTAGGTTGTTGGAGGTGACTCGAATCTGATCGATAAAgATTTATAAAGGCATGTCCACGTTGGATGAGGACGTACGAGATGCTGTATTGGCAGTCCTACCTGGGCTATCAGAGGAGAAACTAGTGTCTCTTTTGAACAAATTGGCAAGCATAGGAGTTGAATCCAAATCTGACTTGCAGTTTGTTAAAGAGGACGATCTTCCTGATCACATCACACCAATACAGTGTCGTCGGCTCCTCAATGCATGGAATATAGAAGacaaaacAGTTTGTGCCAAAGTATCACCTTTAGAATCCACAAACATAGTCTTTGATGTATCACCAGTAAACTCACCATCTTCAAATTTCAGTTCCTCACGTACACCAAGTGTCTCTAGCACAAACAGCTCCAGTTCAACTGTCGATTTAACTGTATGGCCTGAAAACTTTGAAGTTCCATGGAATCGGATGTCTTCTGGTATTAAAACTGCCACTGCACTGGGTAGACGCCCCACAGCTAAAGAACGCAGAGAAATGGTGAGAATCATTGTTGATGAGATGAGACAGACAGAGTTAAATCCATCAAAATCACAATGTCTGATTGTTGCAAAGAAGATTGTTAAACAGTACCCACAAAGCTTTGCTGATGTTTTGAAAGATGGCACAAGAATTGGGACTGGCTATGGATCCCTTTTGATACAGCTAAAAACAAGAGTGGAGCATGTTAATCGTGGCTGCTCATTTTCGAGACGCAGGAAACAAAAAAAGACCTCAAATTCACCACCCGAGGACACTGGACCAGGGCCTACTGACCAGTATGGATGTGTAAGGTGGCAGCCTGAGTGTCCTGTTGATGATACTGAAGAAAGTCTCCAAGAAAAGCAGGAAGAAATGAAGGACCTCTATAGTTGTGAGGGGCCAGCTGGAGCTCAAAAAGGACATCTAAGTCAATTAATGAAAGCTACATACTACCTCCAACGTAAATCGATTAATGCCTGTCCACCACCATCCATTGCTGAGTTGAAAAATGAGTGGCCATATCTTTTTACACCCAAAGAACTGTATAGCCACTTTAAGTCACTTACCAACATCAGCATTTTGGAAAGACTTGAGAAGTCCATGGAAGAAAAAGGAAAGATGATTCTTCAGTTTTTCCATCAAAAGCCAGCAGGGACCAAAACAGATGAGATTCAGCGAATACTTCTGAAGTTTGATGATAGTGGAGCTTCAAGTTTCATTCCATGTGTGGTCCTTGTGCTTCTGTCacactttaaagaaaaaaacgaTGCACTGATTCTTCAGACGGATGTGTCAGCAACAGCAGGTGATGTGGAGAAAAGCTTGGTGCTTCCAGACTCTCCAAGACTAATTGTCTTAGggGACATTCTCACTGCAACTCAGTGGATGCTGAGCATCGAGGGACAAGTAGTTGTTGGTCCACACCCCAATTTCATAGCTGGATTTGCAGCTTTGTTTTCAAGCTACTACAACTTCAATCTGGTGTACCAGGAGCAGGCGTCTTGCACACTCGAATTTGTTCAAAGATGCTTTGTTGGAATCAATCCACCCACTGGGACCAAGGCAGCCACAGCAAAGATTGGAGGAAAAAAAGGTGGAAAGGTGTCAGAGAAGAGGAACCACACAGTCAATCCTCATGTTTGTACTCTTCTCAGAAAGCTAATGGACTTTGAATGGTTAAGCATGTAAGTGAGTTCAAAGTTCAAATACAGGACTTCTGCAAAATGAACAAACTTGTTATAGacacacatttataatattttgattgTTCAAGAACATCTTAAAGctatttgtactttattttttgaaattttgAGAATGTTTTTCAGCAATGTTCAGCAacagaaatgttattttacaaGTTGAACTCTTAGAGTGCTCTGCtgtcagttttaaaaaaatagtttattacAATTGTTTGTATAGACACGTGATGTTGTAACATTTGGGATATCTTTGGGatatcaaaatatcttatttactGCCACTTTTGACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022198 lncRNA downstream 513293 34039521 ~ 34044379 (-) True XLOC_010859
TCONS_00022197 lncRNA downstream 820913 33735328 ~ 33736759 (-) True XLOC_010855
TCONS_00022196 lncRNA downstream 965092 33587815 ~ 33592580 (-) True XLOC_010853
TCONS_00021240 lncRNA downstream 965337 33566997 ~ 33592335 (-) False XLOC_010853
TCONS_00022200 lncRNA upstream 95572 34661060 ~ 34886237 (-) False XLOC_010867
TCONS_00022201 lncRNA upstream 130280 34695768 ~ 34886227 (-) False XLOC_010867
TCONS_00022202 lncRNA upstream 137906 34703394 ~ 34875906 (-) False XLOC_010867
TCONS_00022203 lncRNA upstream 147351 34712839 ~ 34880992 (-) False XLOC_010867
TCONS_00021266 lncRNA upstream 309953 34875441 ~ 34886227 (-) True XLOC_010867
TCONS_00021261 mRNA downstream 79867 34459066 ~ 34477805 (-) True XLOC_010865
TCONS_00021258 mRNA downstream 156260 34322309 ~ 34401412 (-) False XLOC_010863
TCONS_00021257 mRNA downstream 219135 34321394 ~ 34338537 (-) False XLOC_010863
TCONS_00021252 mRNA downstream 272566 34199297 ~ 34285106 (-) False XLOC_010861
TCONS_00021254 mRNA downstream 298741 34234112 ~ 34258931 (-) True XLOC_010861
TCONS_00021267 mRNA upstream 350674 34916162 ~ 35329803 (-) False XLOC_010868
TCONS_00021270 mRNA upstream 350809 34916297 ~ 35330001 (-) False XLOC_010868
TCONS_00021269 mRNA upstream 350809 34916297 ~ 35330001 (-) False XLOC_010868
TCONS_00021268 mRNA upstream 350809 34916297 ~ 35330001 (-) False XLOC_010868
TCONS_00021272 mRNA upstream 640599 35206087 ~ 35329930 (-) True XLOC_010868
TCONS_00021260 other downstream 132111 34400806 ~ 34425561 (-) True XLOC_010863
TCONS_00021259 other downstream 205611 34351945 ~ 34352061 (-) True XLOC_010864
TCONS_00021255 other downstream 251002 34300279 ~ 34306670 (-) False XLOC_010862
TCONS_00021256 other downstream 251695 34302177 ~ 34305977 (-) True XLOC_010862
TCONS_00021244 other downstream 799387 33750067 ~ 33758285 (-) True XLOC_010856
TCONS_00021271 other upstream 529358 35094846 ~ 35094960 (-) True XLOC_010869
TCONS_00021280 other upstream 850101 35415589 ~ 35420909 (-) False XLOC_010872
TCONS_00021283 other upstream 855076 35420564 ~ 35424000 (-) True XLOC_010872
TCONS_00021289 other upstream 1255833 35821321 ~ 35823946 (-) False XLOC_010875
TCONS_00021290 other upstream 1255833 35821321 ~ 35824079 (-) False XLOC_010875

Expression Profile

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