RNA id: TCONS_00022197



Basic Information


Item Value
RNA id TCONS_00022197
length 1310
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_010855
representative True

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 33735328 ~ 33736759 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CAAACTTACAAAGCTtgaattagtttttaattaagaATGCAAATTAGGCAACTTTTTCTCTCTTGCATTAAAGCttaaagtgaatatatatatacttgtacatttaaaactatttagatGGTGAAACAAGTAAAATTGGCATCAACAAAATATGAATACTTATCGTCTCACTTGACCACATGCATACTGCCGTTTGACATACTGACACAAGTATGGTTTAATTGCATTCACTCATAACACAGACATGTTTATAAAGATTTAAGAAAGTCTGACTAGACAAATTAATgatcaaacaattaaaaaaaaaacaggaagtggACTAATATGTAGTTAGTATATATACAGTGTAATGCGTGCTGTATCTTTGTAGAAGTTTCTGTGCTTCTATAGATAATTCAAGCTATAGTAGTGCAAATGCAAGTCTATTTGTCTTCCACCTGTATACAAAATTCAAACTTCATCTTCCCACGCATCTCTGGACTGCAGAATTATTTCAGCAGTTCTTTTATCTGACATTGCTATGCATTTTGGAAGACTCTCCACTCAATTGAATGCATGTGCAATGCAAGTTCTGCTAAGGAAATCTAAAGTTTTAGAAAACAAAAGTGCTCACTAACTACAGCATTCAACAGTCACGCATTTATGTGACTTATATGGTGTGTAAATGCTTCAGCTTTGGGCGTATGACTTTTATTTTACCCAAAACTCACCATCTATCATGCATTCATTGCCGTTCTAACCACTTTGCTTGGCACAGAGTGTTTGGAACAATTCTAATACCAGCTTAATAACAGTTCTGACTGGCCGGCAAAAATAAAGAAGGCGATAACTAGTAGGCAGATCAGATATTTTTATCTGTGCATCGAGGCCTGTACATTAATGGAGTGTTGATACTGGATTGTGCGGTGGATTTGAACTCAGCGTTGCATAGGAAGCATCAAGTCTTGTTTGTCCAGTTGTAAACCAGCAAGTGTATGTTGAGGGTTGTGATGATTGTGCGAGGGGTAGATTGCTGGTTTGCTGTTATGTTAAATAGCAGTATCAGCATGGGCGTTACTTGAAATGGGTAGTTCTTGGGTGAGGGCACAGCAGTgtataatagtgtgtgtgtgtgcatgtgtaaaggAAGGTAAGGCATGTGCATGAGGGTTGTATTCTATAGGGTGCTGTTGCAGTTGCGACAGAGGATCTCATCTTGCTCGGGGAAGAAGCCTGCTCCCACCAGAGAGACAGAGCATCGAGAGCAGGTGAAGCACGGCTGGTGCCATTGCCGGTCCTCAAACGAGATGTACTTTCCCCCGCCAAAACCT

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00022196 lncRNA downstream 142748 33587815 ~ 33592580 (-) True XLOC_010853
TCONS_00022195 lncRNA downstream 142971 33560863 ~ 33592357 (-) False XLOC_010853
TCONS_00021240 lncRNA downstream 142993 33566997 ~ 33592335 (-) False XLOC_010853
TCONS_00021242 lncRNA downstream 143222 33582868 ~ 33592106 (-) False XLOC_010853
TCONS_00021241 lncRNA downstream 143325 33582868 ~ 33592003 (-) False XLOC_010853
TCONS_00022198 lncRNA upstream 302762 34039521 ~ 34044379 (-) True XLOC_010859
TCONS_00021815 lncRNA upstream 820913 34557672 ~ 34565488 (-) False XLOC_010866
TCONS_00022199 lncRNA upstream 821099 34557858 ~ 34561503 (-) False XLOC_010866
TCONS_00022200 lncRNA upstream 924301 34661060 ~ 34886237 (-) False XLOC_010867
TCONS_00022201 lncRNA upstream 959009 34695768 ~ 34886227 (-) False XLOC_010867
TCONS_00021243 mRNA downstream 84750 33645721 ~ 33650578 (-) True XLOC_010854
TCONS_00021236 mRNA downstream 629651 33101851 ~ 33105677 (-) False XLOC_010851
TCONS_00021238 mRNA downstream 630384 33104588 ~ 33104944 (-) True XLOC_010851
TCONS_00021233 mRNA downstream 637930 33062570 ~ 33097398 (-) False XLOC_010850
TCONS_00021234 mRNA downstream 640167 33062856 ~ 33095161 (-) False XLOC_010850
TCONS_00021245 mRNA upstream 36143 33772902 ~ 33816082 (-) False XLOC_010857
TCONS_00021246 mRNA upstream 36888 33773647 ~ 33817828 (-) False XLOC_010857
TCONS_00021247 mRNA upstream 36892 33773651 ~ 33806390 (-) True XLOC_010857
TCONS_00021248 mRNA upstream 188984 33925743 ~ 33930076 (-) False XLOC_010858
TCONS_00021249 mRNA upstream 189053 33925812 ~ 33930759 (-) False XLOC_010858
TCONS_00021239 other downstream 193370 33515766 ~ 33541958 (-) True XLOC_010852
TCONS_00021237 other downstream 630421 33103883 ~ 33104907 (-) False XLOC_010851
TCONS_00021210 other downstream 1085524 32630074 ~ 32649804 (-) False XLOC_010844
TCONS_00021209 other downstream 1161092 32574110 ~ 32574236 (-) True XLOC_010842
TCONS_00021200 other downstream 1530899 32199452 ~ 32204429 (-) True XLOC_010833
TCONS_00021244 other upstream 13308 33750067 ~ 33758285 (-) True XLOC_010856
TCONS_00021255 other upstream 563520 34300279 ~ 34306670 (-) False XLOC_010862
TCONS_00021256 other upstream 565418 34302177 ~ 34305977 (-) True XLOC_010862
TCONS_00021259 other upstream 615186 34351945 ~ 34352061 (-) True XLOC_010864
TCONS_00021260 other upstream 664047 34400806 ~ 34425561 (-) True XLOC_010863

Expression Profile


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