RNA id: TCONS_00021243


Basic Information

Item Value
RNA id TCONS_00021243
length 1095
RNA type mRNA
GC content 0.40
exon number 8
gene id XLOC_010854
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 33645721 ~ 33650578 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCTGCTGTGAATCGTCCAGCAACTGTTTGGCATTGTATCCACGTGAGTGCGGAACTGTACATGTGGGATCGTTCGGCGTTGATACGAATTTCTGTTTAGGTATTTACTAATTATAAAAATAGCATTGGTCTTACATATTTACAGCCATGTCTTCTTTTCGAAAAGCTTTGAAGTCTAAACAACGAGACCACAAAGAGCGCTCACAGCTCGGTTTCAGGAAACATTTGGGATTGTTAGAGAAGAAGAAGGACTACAAACTTCGCGCAGATGACTACCACCGGAAAGAGAAGACCATCTTGGCCTTGCGCAAGAAGGCCATGGATAAGAACCCTGATgaatttaactttaaaatgatACACAACCAATTAAAGGATGGCGTTCACATGGCTAATCGAAAAGATGAAGAAATGACAGAGGAGCAGAAGAAGGTGATGAGGACTCAGGACATCAGATATGTGGAAATGAAGCGGGTGTCAGAGATGAAGAAAATTGAAAGGATGAAGTCAGAGCTCCACTTTCTTgatgagaaaaagaaaaacaaacatgtatTTTTTCTGGACACAAAAAAAGAAgTAAAGAACTTTGACCTGGCTACACACCTTAACACAGTGCCTGAATTGGTGGACCGAGCGTATAACAGACCTACAATAGAGACGCTGGAAAACAAGAGCATTGTGGGAGCAATGAAGGCCAGAGAGATAAAAAGTCTTGCTAAAAAGAGGAATGAACAGTATCTGAGGCTTTCAGAGCGTATTGACAgagaaaagaaaatgtttgtcaTTAGTCAAAAGATTCAAACCAGAAAAGATCTACAAGATAAGGTGAAGAAGGTAAAAGTCTGCAAAGAGACCAGTACTGCTCCTGCCATCTATAAATTTCAGGCCAAGAGGAAAAGATGAAATCTTTGGAAGCGGTCTGTTTTGTTGTCATCAGTCAGCTGTAAGTCCAGGAGGTGGACTTAAAATTCTGAATAGATTTTTCACTTCTGTATAATGGAGATGCTATGCTGGGAATCTTGCACATATAAGGCAAGAAGTTTGTACATATTTATTGCAAATAGGTTTTTGccattacaataaaatgttgTCTGTAA

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0032040 small-subunit processome cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-030131-8093 Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human UTP11 (UTP11 small subunit processome component).

Ensembl:

ensembl_id ENSDART00000058460

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022196 lncRNA downstream 53141 33587815 ~ 33592580 (-) True XLOC_010853
TCONS_00022195 lncRNA downstream 53364 33560863 ~ 33592357 (-) False XLOC_010853
TCONS_00021240 lncRNA downstream 53386 33566997 ~ 33592335 (-) False XLOC_010853
TCONS_00021242 lncRNA downstream 53615 33582868 ~ 33592106 (-) False XLOC_010853
TCONS_00021241 lncRNA downstream 53718 33582868 ~ 33592003 (-) False XLOC_010853
TCONS_00022197 lncRNA upstream 84750 33735328 ~ 33736759 (-) True XLOC_010855
TCONS_00022198 lncRNA upstream 388943 34039521 ~ 34044379 (-) True XLOC_010859
TCONS_00021815 lncRNA upstream 907094 34557672 ~ 34565488 (-) False XLOC_010866
TCONS_00022199 lncRNA upstream 907280 34557858 ~ 34561503 (-) False XLOC_010866
TCONS_00022200 lncRNA upstream 1010482 34661060 ~ 34886237 (-) False XLOC_010867
TCONS_00021236 mRNA downstream 540044 33101851 ~ 33105677 (-) False XLOC_010851
TCONS_00021238 mRNA downstream 540777 33104588 ~ 33104944 (-) True XLOC_010851
TCONS_00021233 mRNA downstream 548323 33062570 ~ 33097398 (-) False XLOC_010850
TCONS_00021234 mRNA downstream 550560 33062856 ~ 33095161 (-) False XLOC_010850
TCONS_00021235 mRNA downstream 568957 33069719 ~ 33076764 (-) True XLOC_010850
TCONS_00021245 mRNA upstream 122324 33772902 ~ 33816082 (-) False XLOC_010857
TCONS_00021246 mRNA upstream 123069 33773647 ~ 33817828 (-) False XLOC_010857
TCONS_00021247 mRNA upstream 123073 33773651 ~ 33806390 (-) True XLOC_010857
TCONS_00021248 mRNA upstream 275165 33925743 ~ 33930076 (-) False XLOC_010858
TCONS_00021249 mRNA upstream 275234 33925812 ~ 33930759 (-) False XLOC_010858
TCONS_00021239 other downstream 103763 33515766 ~ 33541958 (-) True XLOC_010852
TCONS_00021237 other downstream 540814 33103883 ~ 33104907 (-) False XLOC_010851
TCONS_00021210 other downstream 995917 32630074 ~ 32649804 (-) False XLOC_010844
TCONS_00021209 other downstream 1071485 32574110 ~ 32574236 (-) True XLOC_010842
TCONS_00021200 other downstream 1441292 32199452 ~ 32204429 (-) True XLOC_010833
TCONS_00021244 other upstream 99489 33750067 ~ 33758285 (-) True XLOC_010856
TCONS_00021255 other upstream 649701 34300279 ~ 34306670 (-) False XLOC_010862
TCONS_00021256 other upstream 651599 34302177 ~ 34305977 (-) True XLOC_010862
TCONS_00021259 other upstream 701367 34351945 ~ 34352061 (-) True XLOC_010864
TCONS_00021260 other upstream 750228 34400806 ~ 34425561 (-) True XLOC_010863

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_10401933_10404459.mRNA True 2242 mRNA 0.39 8 CI01000027 10401703 ~ 10405712 (-)